U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

phc2 polyhomeotic homolog 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100127572, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
phc2provided by Xenbase
Official Full Name
polyhomeotic homolog 2provided by Xenbase
Primary source
Xenbase:XB-GENE-996998
See related
Ensembl:ENSXETG00000043774
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
ph2; edr2; hph2
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See phc2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
17
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (132928669..132956979)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene SH2 domain containing 5 Neighboring gene kinesin family member 17 Neighboring gene zinc finger protein 362 Neighboring gene tripartite motif containing 62

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_030683.2 Chromosome 7 Reference UCB_Xtro_10.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of protein-containing complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
polyhomeotic-like protein 2
Names
polyhomeotic-like 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001112939.2 → NP_001106410.2  polyhomeotic-like protein 2

    Status: PROVISIONAL

    Source sequence(s)
    BC153340, CX879946
    UniProtKB/TrEMBL
    A0A803J520, A0A803K1N4
    Related
    ENSXETP00000102945.1, ENSXETT00000115736.1
    Conserved Domains (3) summary
    cd09577
    Location:735 → 803
    SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
    PHA03247
    Location:27 → 457
    PHA03247; large tegument protein UL36; Provisional
    pfam16616
    Location:610 → 734
    PHC2_SAM_assoc; Unstructured region on Polyhomeotic-like protein 1 and 2

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    132928669..132956979
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031904775.1 → XP_031760635.1  polyhomeotic-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A803K1N4, A0A8J1JUB9
    Conserved Domains (3) summary
    cd09577
    Location:726 → 794
    SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
    PHA03247
    Location:27 → 457
    PHA03247; large tegument protein UL36; Provisional
    pfam16616
    Location:601 → 726
    PHC2_SAM_assoc; Unstructured region on Polyhomeotic-like protein 1 and 2

  2. XM_031904776.1 → XP_031760636.1  polyhomeotic-like protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A803KGE6, A8E4V3
    Related
    ENSXETP00000119427.1, ENSXETT00000116522.1
    Conserved Domains (3) summary
    cd09577
    Location:675 → 743
    SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
    PHA03247
    Location:34 → 397
    PHA03247; large tegument protein UL36; Provisional
    pfam16616
    Location:550 → 675
    PHC2_SAM_assoc; Unstructured region on Polyhomeotic-like protein 1 and 2
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut