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zgc:173585 zgc:173585 [ Danio rerio (zebrafish) ]

Gene ID: 100124605, updated on 27-Mar-2024

Summary

Official Symbol
zgc:173585provided by ZNC
Official Full Name
zgc:173585provided by ZNC
Primary source
ZFIN:ZDB-GENE-070822-26
See related
Ensembl:ENSDARG00000089039 AllianceGenome:ZFIN:ZDB-GENE-070822-26
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable DNA binding activity. Predicted to be involved in nucleosome assembly. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

Location:
chromosome: 25
Exon count:
1
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (35135649..35136267, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (34630691..34631309, complement)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene si:dkey-261m9.7 Neighboring gene si:dkey-261m9.8 Neighboring gene si:dkey-261m9.9 Neighboring gene si:dkey-261m9.11 Neighboring gene si:dkey-261m9.12

Genomic regions, transcripts, and products

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein LOC100124605
Names
Histone H2B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102632.1NP_001096102.1  uncharacterized protein LOC100124605

    See identical proteins and their annotated locations for NP_001096102.1

    Status: PREDICTED

    Source sequence(s)
    BC150432
    UniProtKB/TrEMBL
    A7E2M8
    Related
    ENSDARP00000099813.2, ENSDART00000109751.4
    Conserved Domains (2) summary
    smart00427
    Location:26122
    H2B; Histone H2B
    pfam00125
    Location:26100
    Histone; Core histone H2A/H2B/H3/H4

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    35135649..35136267 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)