U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100101794, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
smarcc2provided by Xenbase
Official Full Name
SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2provided by Xenbase
Primary source
Xenbase:XB-GENE-490675
See related
Ensembl:ENSXETG00000009486
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
rsc8; baf170; cracc2
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
29
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (137468162..137517578)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (134204847..134253915)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene nucleic acid binding protein 2 Neighboring gene ring finger protein 41 Neighboring gene transfer RNA serine (anticodon CGA) Neighboring gene myosin light chain 6 Neighboring gene extended synaptotagmin-like protein 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables histone binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of SWI/SNF complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in chromosome IEA
Inferred from Electronic Annotation
more info
  
part_of nBAF complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of npBAF complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
SWI/SNF complex subunit SMARCC2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    137468162..137517578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004911875.4 → XP_004911932.1  SWI/SNF complex subunit SMARCC2 isoform X1

    UniProtKB/TrEMBL
    A0A6I8R596, F7DLJ6
    Related
    ENSXETP00000080882.1, ENSXETT00000078782.2
    Conserved Domains (6) summary
    COG5259
    Location:382 → 690
    RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
    pfam03154
    Location:986 → 1166
    Atrophin-1; Atrophin-1 family
    pfam16495
    Location:885 → 951
    SWIRM-assoc_1; SWIRM-associated region 1
    pfam16496
    Location:7 → 420
    SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
    pfam16498
    Location:684 → 748
    SWIRM-assoc_3; SWIRM-associated domain at the C-terminal
    cl22451
    Location:763 → 831
    ASF1_hist_chap; ASF1 like histone chaperone

  2. XM_004911876.4 → XP_004911933.1  SWI/SNF complex subunit SMARCC2 isoform X2

    UniProtKB/TrEMBL
    A0A8J0R166, F7DLJ6
    Related
    ENSXETP00000020949.5, ENSXETT00000020949.5
    Conserved Domains (6) summary
    pfam00249
    Location:616 → 641
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam04433
    Location:427 → 512
    SWIRM; SWIRM domain
    pfam16495
    Location:884 → 950
    SWIRM-assoc_1; SWIRM-associated region 1
    pfam16496
    Location:4 → 420
    SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
    pfam16498
    Location:683 → 746
    SWIRM-assoc_3; SWIRM-associated domain at the C-terminal
    cl22451
    Location:762 → 830
    ASF1_hist_chap; ASF1 like histone chaperone

  3. XM_004911878.4 → XP_004911935.1  SWI/SNF complex subunit SMARCC2 isoform X3

    UniProtKB/TrEMBL
    A0A6I8S7N2, F7DLJ6
    Related
    ENSXETP00000089183.2, ENSXETT00000094399.2
    Conserved Domains (6) summary
    pfam00249
    Location:617 → 642
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam04433
    Location:427 → 512
    SWIRM; SWIRM domain
    pfam16495
    Location:885 → 951
    SWIRM-assoc_1; SWIRM-associated region 1
    pfam16496
    Location:4 → 420
    SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
    pfam16498
    Location:684 → 747
    SWIRM-assoc_3; SWIRM-associated domain at the C-terminal
    cl22451
    Location:763 → 831
    ASF1_hist_chap; ASF1 like histone chaperone

  4. XM_002934495.5 → XP_002934541.2  SWI/SNF complex subunit SMARCC2 isoform X4

    UniProtKB/TrEMBL
    A0A8J0QLK5, F7DLJ6
    Conserved Domains (5) summary
    PHA03247
    Location:975 → 1103
    PHA03247; large tegument protein UL36; Provisional
    COG5259
    Location:382 → 690
    RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
    pfam16495
    Location:885 → 951
    SWIRM-assoc_1; SWIRM-associated region 1
    pfam16496
    Location:7 → 420
    SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
    pfam16498
    Location:684 → 748
    SWIRM-assoc_3; SWIRM-associated domain at the C-terminal

  5. XM_012957799.3 → XP_012813253.1  SWI/SNF complex subunit SMARCC2 isoform X5

    UniProtKB/TrEMBL
    A0A8J0SGX1, F7DLJ6
    Conserved Domains (4) summary
    COG5259
    Location:382 → 690
    RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
    pfam16495
    Location:885 → 951
    SWIRM-assoc_1; SWIRM-associated region 1
    pfam16496
    Location:7 → 420
    SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
    pfam16498
    Location:684 → 748
    SWIRM-assoc_3; SWIRM-associated domain at the C-terminal

  6. XM_012957800.3 → XP_012813254.1  SWI/SNF complex subunit SMARCC2 isoform X6

    UniProtKB/TrEMBL
    A0A8J0SDY5, F7DLJ6
    Conserved Domains (6) summary
    COG5259
    Location:382 → 689
    RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
    pfam04433
    Location:427 → 512
    SWIRM; SWIRM domain
    pfam16495
    Location:884 → 950
    SWIRM-assoc_1; SWIRM-associated region 1
    pfam16496
    Location:4 → 420
    SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
    pfam16498
    Location:683 → 746
    SWIRM-assoc_3; SWIRM-associated domain at the C-terminal
    cl22451
    Location:762 → 830
    ASF1_hist_chap; ASF1 like histone chaperone
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.