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pdlim5.L PDZ and LIM domain 5 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100101292, updated on 18-Sep-2024

Summary

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Official Symbol
pdlim5.L
Official Full Name
PDZ and LIM domain 5 L homeolog
Primary source
Xenbase:XB-GENE-866538
Locus tag
XELAEV_18005761mg
See related
EnsemblRapid:ENSXLAG00005035874
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pdlim5
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Genomic context

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Location:
chromosome: 1L
Exon count:
26
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (81171020..81330999, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (70310445..70434013, complement)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene unc-5 netrin receptor C L homeolog Neighboring gene bone morphogenetic protein receptor type 1B L homeolog Neighboring gene melanopsin-B-like L homeolog Neighboring gene hematopoietic prostaglandin D synthase L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables muscle alpha-actinin binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within heart development IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within muscle structure development IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
  
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
  
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
  
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PDZ and LIM domain 5 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099881.1 → NP_001093351.1  PDZ and LIM domain 5 L homeolog

    See identical proteins and their annotated locations for NP_001093351.1

    Status: PROVISIONAL

    Source sequence(s)
    BC142560
    UniProtKB/TrEMBL
    A5PKP0
    Related
    ENSXLAP00005107319.1, ENSXLAT00005109445.1
    Conserved Domains (5) summary
    cd09453
    Location:406 → 457
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09457
    Location:465 → 516
    LIM2_ENH; The second LIM domain of the Enigma Homolog (ENH) family
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:212 → 304
    DUF4749; Domain of unknown function (DUF4749)
    cl02475
    Location:524 → 578
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    81171020..81330999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041579355.1 → XP_041435289.1  PDZ and LIM domain 5 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1M0M6
    Conserved Domains (5) summary
    cd09453
    Location:714 → 765
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09457
    Location:773 → 824
    LIM2_ENH; The second LIM domain of the Enigma Homolog (ENH) family
    cd09459
    Location:832 → 886
    LIM3_ENH; The third LIM domain of the Enigma Homolog (ENH) family
    PHA03247
    Location:86 → 255
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_041579379.1 → XP_041435313.1  PDZ and LIM domain 5 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1M0M6
    Conserved Domains (5) summary
    cd09453
    Location:714 → 765
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09457
    Location:773 → 824
    LIM2_ENH; The second LIM domain of the Enigma Homolog (ENH) family
    cd09459
    Location:832 → 886
    LIM3_ENH; The third LIM domain of the Enigma Homolog (ENH) family
    PHA03247
    Location:86 → 255
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  3. XM_041579310.1 → XP_041435244.1  PDZ and LIM domain 5 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1M0M6
    Conserved Domains (5) summary
    cd09453
    Location:714 → 765
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09457
    Location:773 → 824
    LIM2_ENH; The second LIM domain of the Enigma Homolog (ENH) family
    cd09459
    Location:832 → 886
    LIM3_ENH; The third LIM domain of the Enigma Homolog (ENH) family
    PHA03247
    Location:86 → 255
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  4. XM_041579696.1 → XP_041435630.1  PDZ and LIM domain 5 L homeolog isoform X9

    UniProtKB/TrEMBL
    A0A8J1M3L9
    Conserved Domains (5) summary
    cd09453
    Location:548 → 599
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09457
    Location:607 → 658
    LIM2_ENH; The second LIM domain of the Enigma Homolog (ENH) family
    cd09459
    Location:666 → 720
    LIM3_ENH; The third LIM domain of the Enigma Homolog (ENH) family
    PHA03247
    Location:86 → 255
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  5. XM_041579572.1 → XP_041435506.1  PDZ and LIM domain 5 L homeolog isoform X6

    UniProtKB/TrEMBL
    A0A8J1M2F3
    Conserved Domains (5) summary
    cd09453
    Location:617 → 668
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09457
    Location:676 → 727
    LIM2_ENH; The second LIM domain of the Enigma Homolog (ENH) family
    cd09459
    Location:735 → 789
    LIM3_ENH; The third LIM domain of the Enigma Homolog (ENH) family
    PHA03247
    Location:86 → 255
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  6. XM_041579453.1 → XP_041435387.1  PDZ and LIM domain 5 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1M0Z7
    Conserved Domains (5) summary
    cd09453
    Location:708 → 759
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09457
    Location:767 → 818
    LIM2_ENH; The second LIM domain of the Enigma Homolog (ENH) family
    cd09459
    Location:826 → 880
    LIM3_ENH; The third LIM domain of the Enigma Homolog (ENH) family
    PHA03247
    Location:86 → 234
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  7. XM_041579498.1 → XP_041435432.1  PDZ and LIM domain 5 L homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J1M141
    Related
    ENSXLAP00005107274.1, ENSXLAT00005109400.1
    Conserved Domains (5) summary
    cd09453
    Location:676 → 727
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09457
    Location:735 → 786
    LIM2_ENH; The second LIM domain of the Enigma Homolog (ENH) family
    cd09459
    Location:794 → 848
    LIM3_ENH; The third LIM domain of the Enigma Homolog (ENH) family
    PHA03247
    Location:86 → 255
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  8. XM_041578674.1 → XP_041434608.1  PDZ and LIM domain 5 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1M0M6
    Conserved Domains (5) summary
    cd09453
    Location:714 → 765
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09457
    Location:773 → 824
    LIM2_ENH; The second LIM domain of the Enigma Homolog (ENH) family
    cd09459
    Location:832 → 886
    LIM3_ENH; The third LIM domain of the Enigma Homolog (ENH) family
    PHA03247
    Location:86 → 255
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  9. XM_041579026.1 → XP_041434960.1  PDZ and LIM domain 5 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1M0M6
    Conserved Domains (5) summary
    cd09453
    Location:714 → 765
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09457
    Location:773 → 824
    LIM2_ENH; The second LIM domain of the Enigma Homolog (ENH) family
    cd09459
    Location:832 → 886
    LIM3_ENH; The third LIM domain of the Enigma Homolog (ENH) family
    PHA03247
    Location:86 → 255
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  10. XM_041579413.1 → XP_041435347.1  PDZ and LIM domain 5 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A1L8HVF6, A0A974I2Y4
    Conserved Domains (6) summary
    cd09453
    Location:713 → 764
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09457
    Location:772 → 823
    LIM2_ENH; The second LIM domain of the Enigma Homolog (ENH) family
    cd09459
    Location:831 → 885
    LIM3_ENH; The third LIM domain of the Enigma Homolog (ENH) family
    PHA03247
    Location:86 → 255
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:212 → 320
    DUF4749; Domain of unknown function (DUF4749)

  11. XM_041579596.1 → XP_041435530.1  PDZ and LIM domain 5 L homeolog isoform X7

    UniProtKB/TrEMBL
    A0A8J1M3B6
    Conserved Domains (5) summary
    cd09453
    Location:601 → 652
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09457
    Location:660 → 711
    LIM2_ENH; The second LIM domain of the Enigma Homolog (ENH) family
    cd09459
    Location:719 → 773
    LIM3_ENH; The third LIM domain of the Enigma Homolog (ENH) family
    PHA03247
    Location:251 → 577
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  12. XM_041579662.1 → XP_041435596.1  PDZ and LIM domain 5 L homeolog isoform X8

    UniProtKB/TrEMBL
    A0A8J1M2Q9
    Related
    ENSXLAP00005107291.1, ENSXLAT00005109417.1
    Conserved Domains (5) summary
    cd09453
    Location:570 → 621
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09459
    Location:688 → 742
    LIM3_ENH; The third LIM domain of the Enigma Homolog (ENH) family
    PHA03247
    Location:220 → 546
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl02475
    Location:629 → 680
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  13. XM_041579537.1 → XP_041435471.1  PDZ and LIM domain 5 L homeolog isoform X5

    UniProtKB/TrEMBL
    A0A8J1M2B9
    Conserved Domains (4) summary
    cd09453
    Location:654 → 705
    LIM1_ENH; The first LIM domain of the Enigma Homolog (ENH) family
    cd09457
    Location:713 → 764
    LIM2_ENH; The second LIM domain of the Enigma Homolog (ENH) family
    cd09459
    Location:772 → 826
    LIM3_ENH; The third LIM domain of the Enigma Homolog (ENH) family
    PHA03247
    Location:26 → 195
    PHA03247; large tegument protein UL36; Provisional

  14. XM_041579798.1 → XP_041435732.1  PDZ and LIM domain 5 L homeolog isoform X11

    UniProtKB/TrEMBL
    A0A8J1M208
    Conserved Domains (2) summary
    PHA03247
    Location:86 → 234
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  15. XM_041579733.1 → XP_041435667.1  PDZ and LIM domain 5 L homeolog isoform X10

    UniProtKB/TrEMBL
    A0A8J1M1U0
    Conserved Domains (2) summary
    PHA03247
    Location:86 → 255
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:10 → 82
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein Strain
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