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HDAC6 histone deacetylase 6 [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100090183, updated on 30-Apr-2024

Summary

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Gene symbol
HDAC6
Gene description
histone deacetylase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
28
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) 6 NC_041733.1 (21974495..21991582)

Chromosome 6 - NC_041733.1Genomic Context describing neighboring genes Neighboring gene cyclin dependent kinase 20 Neighboring gene GATA binding protein 1 Neighboring gene myoD family inhibitor-like Neighboring gene proprotein convertase subtilisin/kexin type 1 inhibitor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041733.1 Chromosome 6 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041733.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    21974495..21991582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029067614.2 → XP_028923447.1  histone deacetylase 6

    UniProtKB/TrEMBL
    F6ST01
    Conserved Domains (4) summary
    cd10003
    Location:510 → 860
    HDAC6-dom2; Histone deacetylase 6, domain 2
    PHA03169
    Location:867 → 1031
    PHA03169; hypothetical protein; Provisional
    pfam02148
    Location:1050 → 1112
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    cl17011
    Location:98 → 434
    Arginase_HDAC; Arginase-like and histone-like hydrolases
Nucleotide Protein
Heading Accession and Version

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