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LTBP1 latent transforming growth factor beta binding protein 1 [ Ornithorhynchus anatinus (platypus) ]

Gene ID: 100080090, updated on 30-Apr-2024

Summary

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Gene symbol
LTBP1
Gene description
latent transforming growth factor beta binding protein 1
See related
Ensembl:ENSOANG00000002334
Gene type
protein coding
RefSeq status
MODEL
Organism
Ornithorhynchus anatinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
34
Annotation release Status Assembly Chr Location
105 current mOrnAna1.pri.v4 (GCF_004115215.2) 1 NC_041728.1 (70013070..70429609)

Chromosome 1 - NC_041728.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 27 Neighboring gene small nucleolar RNA SNORA7 Neighboring gene small nucleolar RNA SNORA7 Neighboring gene small nucleolar RNA SNORA7 Neighboring gene small nucleolar RNA SNORA7 Neighboring gene small nucleolar RNA SNORA7 Neighboring gene small nucleolar RNA SNORA7 Neighboring gene small nucleolar RNA SNORA7 Neighboring gene uncharacterized LOC114809192 Neighboring gene small nucleolar RNA SNORA7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041728.1 Chromosome 1 Reference mOrnAna1.pri.v4 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
latent-transforming growth factor beta-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ornithorhynchus anatinus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrnAna1.pri.v4 Primary Assembly

Genomic

  1. NC_041728.1 Reference mOrnAna1.pri.v4 Primary Assembly

    Range
    70013070..70429609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029058450.2 → XP_028914283.1  latent-transforming growth factor beta-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A6I8NKN1, A0A6I8NX32
    Related
    ENSOANP00000045465.1
    Conserved Domains (5) summary
    smart00179
    Location:1088 → 1128
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:966 → 999
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam07645
    Location:883 → 923
    EGF_CA; Calcium-binding EGF domain
    pfam00683
    Location:657 → 698
    TB; TB domain
    pfam12662
    Location:864 → 886
    cEGF; Complement Clr-like EGF-like

  2. XM_029058420.2 → XP_028914253.1  latent-transforming growth factor beta-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8NKN1, F6YZQ0
    Related
    ENSOANP00000003699.3
    Conserved Domains (5) summary
    smart00179
    Location:1088 → 1128
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:966 → 999
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam07645
    Location:883 → 923
    EGF_CA; Calcium-binding EGF domain
    pfam00683
    Location:657 → 698
    TB; TB domain
    pfam12662
    Location:864 → 886
    cEGF; Complement Clr-like EGF-like

  3. XM_029058428.2 → XP_028914261.1  latent-transforming growth factor beta-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6I8NKN1
    Conserved Domains (5) summary
    smart00179
    Location:1087 → 1127
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:965 → 998
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam07645
    Location:882 → 922
    EGF_CA; Calcium-binding EGF domain
    pfam00683
    Location:657 → 698
    TB; TB domain
    pfam12662
    Location:863 → 885
    cEGF; Complement Clr-like EGF-like

  4. XM_029058438.2 → XP_028914271.1  latent-transforming growth factor beta-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A6I8NKN1
    Conserved Domains (5) summary
    smart00179
    Location:1078 → 1118
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:956 → 989
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam07645
    Location:873 → 913
    EGF_CA; Calcium-binding EGF domain
    pfam00683
    Location:647 → 688
    TB; TB domain
    pfam12662
    Location:854 → 876
    cEGF; Complement Clr-like EGF-like

  5. XM_029058455.2 → XP_028914288.1  latent-transforming growth factor beta-binding protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A6I8NKN1
    Conserved Domains (5) summary
    smart00179
    Location:1035 → 1075
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:913 → 946
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam07645
    Location:830 → 870
    EGF_CA; Calcium-binding EGF domain
    pfam00683
    Location:1270 → 1313
    TB; TB domain
    pfam12662
    Location:811 → 833
    cEGF; Complement Clr-like EGF-like

  6. XM_029058463.2 → XP_028914296.1  latent-transforming growth factor beta-binding protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A6I8NKN1, A0A6I8PAF9
    Related
    ENSOANP00000049770.1
    Conserved Domains (5) summary
    smart00179
    Location:1012 → 1052
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:890 → 923
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam07645
    Location:807 → 847
    EGF_CA; Calcium-binding EGF domain
    pfam00683
    Location:1247 → 1290
    TB; TB domain
    pfam12662
    Location:788 → 810
    cEGF; Complement Clr-like EGF-like

  7. XM_029058480.2 → XP_028914313.1  latent-transforming growth factor beta-binding protein 1 isoform X7

    Conserved Domains (5) summary
    smart00179
    Location:795 → 835
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:673 → 706
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam07645
    Location:590 → 630
    EGF_CA; Calcium-binding EGF domain
    pfam00683
    Location:364 → 405
    TB; TB domain
    pfam12662
    Location:571 → 593
    cEGF; Complement Clr-like EGF-like

  8. XM_029058499.2 → XP_028914332.1  latent-transforming growth factor beta-binding protein 1 isoform X9

    Conserved Domains (5) summary
    smart00179
    Location:742 → 782
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:620 → 653
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam07645
    Location:537 → 577
    EGF_CA; Calcium-binding EGF domain
    pfam00683
    Location:935 → 978
    TB; TB domain
    pfam12662
    Location:518 → 540
    cEGF; Complement Clr-like EGF-like

  9. XM_029058489.2 → XP_028914322.1  latent-transforming growth factor beta-binding protein 1 isoform X8

    Conserved Domains (5) summary
    smart00179
    Location:742 → 782
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:620 → 653
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam07645
    Location:537 → 577
    EGF_CA; Calcium-binding EGF domain
    pfam00683
    Location:977 → 1020
    TB; TB domain
    pfam12662
    Location:518 → 540
    cEGF; Complement Clr-like EGF-like
Nucleotide Protein
Heading Accession and Version

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