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LOC100069843 polycystin-1-like protein 2 [ Equus caballus (horse) ]

Gene ID: 100069843, updated on 15-Aug-2024

Summary

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Gene symbol
LOC100069843
Gene description
polycystin-1-like protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Also known as
PKD1L2
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Genomic context

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Location:
chromosome: 3
Exon count:
43
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 3 NC_009146.3 (29582597..29679850, complement)

Chromosome 3 - NC_009146.3Genomic Context describing neighboring genes Neighboring gene chromosome 3 C16orf46 homolog Neighboring gene uncharacterized LOC106782970 Neighboring gene glycine cleavage system protein H Neighboring gene uncharacterized LOC111772802 Neighboring gene beta-carotene oxygenase 1 Neighboring gene gigaxonin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009146.3 Chromosome 3 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystic kidney disease protein 1-like 2
Names
polycystic kidney disease 1-like 2
polycystin 1 like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009146.3 Reference EquCab3.0 Primary Assembly

    Range
    29582597..29679850 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023637375.1 → XP_023493143.1  polycystic kidney disease protein 1-like 2

    Conserved Domains (5) summary
    smart00303
    Location:1281 → 1320
    GPS; G-protein-coupled receptor proteolytic site domain
    smart00034
    Location:28 → 154
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    cd01752
    Location:1391 → 1510
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    pfam02140
    Location:170 → 252
    Gal_Lectin; Galactose binding lectin domain
    cl27887
    Location:1988 → 2408
    PKD_channel; Polycystin cation channel
Nucleotide Protein
Heading Accession and Version

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