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YBX1 Y-box binding protein 1 [ Equus caballus (horse) ]

Gene ID: 100067336, updated on 8-Mar-2024

Summary

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Official Symbol
YBX1provided by VGNC
Official Full Name
Y-box binding protein 1provided by VGNC
Primary source
VGNC:VGNC:25095
See related
Ensembl:ENSECAG00000023592
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See YBX1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 2 NC_009145.3 (15774903..15794582, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 2 NC_009145.2 (15725763..15744467, complement)

Chromosome 2 - NC_009145.3Genomic Context describing neighboring genes Neighboring gene prolyl 3-hydroxylase 1 Neighboring gene claudin 19 Neighboring gene peptidylprolyl isomerase H Neighboring gene coiled-coil domain containing 30 Neighboring gene phosphopantothenoylcysteine synthetase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of messenger ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclease-sensitive element-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009145.3 Reference EquCab3.0 Primary Assembly

    Range
    15774903..15794582 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023632230.1 → XP_023487998.1  nuclease-sensitive element-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A9L0S802
    Conserved Domains (1) summary
    cd04458
    Location:61 → 90
    CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

  2. XM_023632226.1 → XP_023487994.1  nuclease-sensitive element-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A9L0S802, F7C883
    Related
    ENSECAP00000021120.3, ENSECAT00000025392.4
    Conserved Domains (1) summary
    pfam00313
    Location:59 → 128
    CSD; 'Cold-shock' DNA-binding domain
Nucleotide Protein
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