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PDE1B phosphodiesterase 1B [ Equus caballus (horse) ]

Gene ID: 100064711, updated on 8-Mar-2024

Summary

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Official Symbol
PDE1Bprovided by VGNC
Official Full Name
phosphodiesterase 1Bprovided by VGNC
Primary source
VGNC:VGNC:21240
See related
Ensembl:ENSECAG00000048352
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See PDE1B in Genome Data Viewer
Location:
chromosome: 6
Exon count:
20
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 6 NC_009149.3 (72215542..72251948)
102 previous assembly EquCab2.0 (GCF_000002305.2) 6 NC_009149.2 (71313787..71350305)

Chromosome 6 - NC_009149.3Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U3 Neighboring gene gametocyte specific factor 1 Neighboring gene uncharacterized LOC102150750 Neighboring gene NCK associated protein 1 like Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 1A Neighboring gene extracellular glycoprotein lacritin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B
Names
phosphodiesterase 1B, calmodulin-dependent

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009149.3 Reference EquCab3.0 Primary Assembly

    Range
    72215542..72251948
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014740890.2 → XP_014596376.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B isoform X2

    UniProtKB/TrEMBL
    A0A3Q2HSF3
    Conserved Domains (2) summary
    pfam00233
    Location:221 → 441
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:80 → 136
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  2. XM_001504577.4 → XP_001504627.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B isoform X2

    See identical proteins and their annotated locations for XP_001504627.1

    UniProtKB/TrEMBL
    A0A3Q2HSF3
    Conserved Domains (2) summary
    pfam00233
    Location:221 → 441
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:80 → 136
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  3. XM_005611267.3 → XP_005611324.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B isoform X4

    See identical proteins and their annotated locations for XP_005611324.1

    UniProtKB/TrEMBL
    A0A3Q2HSF3
    Related
    ENSECAP00000038080.2, ENSECAT00000051294.2
    Conserved Domains (2) summary
    pfam00233
    Location:181 → 401
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:40 → 96
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  4. XM_005611268.3 → XP_005611325.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B isoform X4

    See identical proteins and their annotated locations for XP_005611325.1

    UniProtKB/TrEMBL
    A0A3Q2HSF3
    Conserved Domains (2) summary
    pfam00233
    Location:181 → 401
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:40 → 96
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  5. XM_003365253.4 → XP_003365301.2  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B isoform X1

    UniProtKB/TrEMBL
    A0A3Q2GYF1
    Related
    ENSECAP00000025574.2, ENSECAT00000064539.3
    Conserved Domains (2) summary
    pfam00233
    Location:333 → 550
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:192 → 248
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  6. XM_023643730.1 → XP_023499498.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B isoform X3

    UniProtKB/TrEMBL
    A0A3Q2HSF3
    Conserved Domains (2) summary
    pfam00233
    Location:186 → 403
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:45 → 101
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
Nucleotide Protein
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