COL15A1 collagen type XV alpha 1 chain [Equus caballus (horse)] - Gene

Summary

Official Symbol: COL15A1provided by VGNC
Official Full Name: collagen type XV alpha 1 chainprovided by VGNC
Primary source: VGNC:VGNC:16725
See related: Ensembl:ENSECAG00000021211
Gene type: protein coding
RefSeq status: MODEL
Organism: Equus caballus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 25

Exon count:: 42

Annotation release	Status	Assembly	Chr	Location
103	current	EquCab3.0 (GCF_002863925.1)	25	NC_009168.3 (5740354..5842637)
102	previous assembly	EquCab2.0 (GCF_000002305.2)	25	NC_009168.2 (5714308..5792748)

Chromosome 25 - NC_009168.3 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Component	Evidence Code	Pubs
located_in basement membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: collagen alpha-1(XV) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

NC_009168.3 Reference EquCab3.0 Primary Assembly

Range

5740354..5842637

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_023629739.1 → XP_023485507.1 collagen alpha-1(XV) chain isoform X2

UniProtKB/TrEMBL

A0A9L0T5L7, F6Q947

Related

ENSECAP00000018945.2, ENSECAT00000022897.4

Conserved Domains (6) summary

pfam01391
Location:840 → 925

Collagen; Collagen triple helix repeat (20 copies)

smart00210
Location:39 → 227

TSPN; Thrombospondin N-terminal -like domains

cd00247
Location:1215 → 1381

Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...

pfam14962
Location:224 → 319

AIF-MLS; Mitochondria localization Sequence

cl26386
Location:349 → 600

DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

cl26563
Location:479 → 595

DUF2339; Predicted membrane protein (DUF2339)
XM_005605653.3 → XP_005605710.2 collagen alpha-1(XV) chain isoform X1

UniProtKB/TrEMBL

A0A9L0R4R2, A0A9L0S9B4

Related

ENSECAP00000059050.1, ENSECAT00000119169.1

Conserved Domains (6) summary

pfam01391
Location:832 → 917

Collagen; Collagen triple helix repeat (20 copies)

smart00210
Location:31 → 219

TSPN; Thrombospondin N-terminal -like domains

cd00247
Location:1207 → 1373

Endostatin-like; Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; ...

pfam14962
Location:216 → 311

AIF-MLS; Mitochondria localization Sequence

cl26386
Location:341 → 592

DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

cl26563
Location:471 → 587

DUF2339; Predicted membrane protein (DUF2339)