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ELOC elongin C [ Equus caballus (horse) ]

Gene ID: 100060902, updated on 17-Aug-2024

Summary

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Official Symbol
ELOCprovided by VGNC
Official Full Name
elongin Cprovided by VGNC
Primary source
VGNC:VGNC:17536
See related
Ensembl:ENSECAG00000000064
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Also known as
TCEB1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 9 NC_009152.3 (12950338..12969147)

Chromosome 9 - NC_009152.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111774922 Neighboring gene U6 spliceosomal RNA Neighboring gene lymphocyte antigen 96 Neighboring gene transmembrane protein 70 Neighboring gene ubiquitin conjugating enzyme E2 W Neighboring gene staufen double-stranded RNA binding protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009152.3 Chromosome 9 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-macromolecule adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of elongin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
elongin-C
Names
transcription elongation factor B subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009152.3 Reference EquCab3.0 Primary Assembly

    Range
    12950338..12969147
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005613051.3 → XP_005613108.1  elongin-C

    See identical proteins and their annotated locations for XP_005613108.1

    UniProtKB/TrEMBL
    A0A9L0R7B6, F7D5C0
    Related
    ENSECAP00000072656.1, ENSECAT00000085768.1
    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

  2. XM_003365580.4 → XP_003365628.1  elongin-C

    See identical proteins and their annotated locations for XP_003365628.1

    UniProtKB/TrEMBL
    A0A9L0R7B6, F7D5C0
    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

  3. XM_001493018.6 → XP_001493068.2  elongin-C

    See identical proteins and their annotated locations for XP_001493068.2

    UniProtKB/TrEMBL
    A0A9L0R7B6, F7D5C0
    Related
    ENSECAP00000000044.3, ENSECAT00000000058.4
    Conserved Domains (1) summary
    cd18321
    Location:18 → 112
    BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins
Nucleotide Protein
Heading Accession and Version

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