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DSCAM DS cell adhesion molecule [ Equus caballus (horse) ]

Gene ID: 100058783, updated on 8-Mar-2024

Summary

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Official Symbol
DSCAMprovided by VGNC
Official Full Name
DS cell adhesion moleculeprovided by VGNC
Primary source
VGNC:VGNC:57336
See related
Ensembl:ENSECAG00000012936
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See DSCAM in Genome Data Viewer
Location:
chromosome: 26
Exon count:
33
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 26 NC_009169.3 (37145402..37833698, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 26 NC_009169.2 (35886289..36168803, complement)

Chromosome 26 - NC_009169.3Genomic Context describing neighboring genes Neighboring gene immunoglobulin superfamily member 5 Neighboring gene Purkinje cell protein 4 Neighboring gene uncharacterized LOC111770824 Neighboring gene uncharacterized LOC111770827 Neighboring gene beta-secretase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite self-avoidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Down syndrome cell adhesion molecule

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009169.3 Reference EquCab3.0 Primary Assembly

    Range
    37145402..37833698 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023630201.1 → XP_023485969.1  Down syndrome cell adhesion molecule

    UniProtKB/TrEMBL
    F6ZZD4
    Related
    ENSECAP00000011606.4, ENSECAT00000014512.4
    Conserved Domains (8) summary
    cd05734
    Location:707 → 784
    Ig_DSCAM; Immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)
    smart00408
    Location:239 → 300
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:320 → 400
    IG; Immunoglobulin
    cd00063
    Location:1380 → 1470
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam13927
    Location:407 → 488
    Ig_3; Immunoglobulin domain
    cd00096
    Location:1305 → 1369
    Ig; Immunoglobulin domain
    cl11960
    Location:802 → 889
    Ig; Immunoglobulin domain
    cl28434
    Location:596 → 686
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
Heading Accession and Version

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