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PDCD6 programmed cell death 6 [ Equus caballus (horse) ]

Gene ID: 100057312, updated on 8-Mar-2024

Summary

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Official Symbol
PDCD6provided by VGNC
Official Full Name
programmed cell death 6provided by VGNC
Primary source
VGNC:VGNC:59282
See related
Ensembl:ENSECAG00000021111
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See PDCD6 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
10
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 21 NC_009164.3 (58830334..58848255, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 21 NC_009164.2 (57569437..57586225, complement)

Chromosome 21 - NC_009164.3Genomic Context describing neighboring genes Neighboring gene exocyst complex component 3 Neighboring gene aryl hydrocarbon receptor repressor Neighboring gene translation initiation factor IF-2-like Neighboring gene succinate dehydrogenase complex flavoprotein subunit A Neighboring gene coiled-coil domain containing 127

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
programmed cell death protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009164.3 Reference EquCab3.0 Primary Assembly

    Range
    58830334..58848255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023625913.1 → XP_023481681.1  programmed cell death protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A9L0RZ59
    Conserved Domains (1) summary
    cd16183
    Location:25 → 187
    EFh_PEF_ALG-2; EF-hand, calcium binding motif, found in apoptosis-linked gene 2 protein (ALG-2) and similar proteins

  2. XM_023625912.1 → XP_023481680.1  programmed cell death protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A9L0RZ59
    Conserved Domains (1) summary
    cd16183
    Location:25 → 189
    EFh_PEF_ALG-2; EF-hand, calcium binding motif, found in apoptosis-linked gene 2 protein (ALG-2) and similar proteins

  3. XM_014734952.2 → XP_014590438.1  programmed cell death protein 6 isoform X3

    Conserved Domains (2) summary
    cd15897
    Location:24 → 54
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:1 → 121
    EFh_PEF; The penta-EF hand (PEF) family

  4. XM_023625915.1 → XP_023481683.1  programmed cell death protein 6 isoform X5

    UniProtKB/TrEMBL
    A0A9L0RZ59
    Conserved Domains (2) summary
    cd15897
    Location:25 → 54
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:25 → 157
    EFh_PEF; The penta-EF hand (PEF) family

  5. XM_023625914.1 → XP_023481682.1  programmed cell death protein 6 isoform X4

    UniProtKB/TrEMBL
    A0A9L0RZ59, F6UJN2
    Related
    ENSECAP00000018627.4, ENSECAT00000022534.4
    Conserved Domains (2) summary
    cd15897
    Location:25 → 54
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:25 → 157
    EFh_PEF; The penta-EF hand (PEF) family

  6. XM_023625916.1 → XP_023481684.1  programmed cell death protein 6 isoform X6

    UniProtKB/TrEMBL
    A0A9L0RZ59
    Related
    ENSECAP00000067876.1, ENSECAT00000120867.1
    Conserved Domains (2) summary
    cd15897
    Location:25 → 54
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:25 → 158
    EFh_PEF; The penta-EF hand (PEF) family

RNA

  1. XR_002802707.1 RNA Sequence

  2. XR_002802703.1 RNA Sequence

  3. XR_002802700.1 RNA Sequence

  4. XR_002802701.1 RNA Sequence

  5. XR_002802705.1 RNA Sequence

  6. XR_002802704.1 RNA Sequence

  7. XR_002802702.1 RNA Sequence

  8. XR_002802706.1 RNA Sequence

Nucleotide Protein
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