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VAPB VAMP associated protein B and C [ Equus caballus (horse) ]

Gene ID: 100056253, updated on 17-Aug-2024

Summary

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Official Symbol
VAPBprovided by VGNC
Official Full Name
VAMP associated protein B and Cprovided by VGNC
Primary source
VGNC:VGNC:51622
See related
Ensembl:ENSECAG00000013265
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 22
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 22 NC_009165.3 (45775774..45823813)

Chromosome 22 - NC_009165.3Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit 1 Neighboring gene ankyrin repeat domain 60 Neighboring gene RAB22A, member RAS oncogene family Neighboring gene APC down-regulated 1 like Neighboring gene uncharacterized LOC111770044

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009165.3 Chromosome 22 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables FFAT motif binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum-plasma membrane tethering IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vesicle-associated membrane protein-associated protein B/C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009165.3 Reference EquCab3.0 Primary Assembly

    Range
    45775774..45823813
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023626809.1 → XP_023482577.1  vesicle-associated membrane protein-associated protein B/C isoform X2

    UniProtKB/TrEMBL
    A0A3Q2HCS2
    Conserved Domains (1) summary
    pfam00635
    Location:8 → 105
    Motile_Sperm; MSP (Major sperm protein) domain

  2. XM_023626808.1 → XP_023482576.1  vesicle-associated membrane protein-associated protein B/C isoform X1

    UniProtKB/TrEMBL
    A0A3Q2HCS2
    Related
    ENSECAP00000031987.2, ENSECAT00000043880.2
    Conserved Domains (1) summary
    pfam00635
    Location:8 → 111
    Motile_Sperm; MSP (Major sperm protein) domain
Nucleotide Protein
Heading Accession and Version

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