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CD1A6 CD1a6 molecule [ Equus caballus (horse) ]

Gene ID: 100055394, updated on 22-Oct-2023

Summary

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Gene symbol
CD1A6
Gene description
CD1a6 molecule
See related
Ensembl:ENSECAG00000046598
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
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Genomic context

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See CD1A6 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 5 NC_009148.3 (35693535..35700257, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 5 NC_009148.2 (39292887..39299555, complement)

Chromosome 5 - NC_009148.3Genomic Context describing neighboring genes Neighboring gene CD1a7 molecule Neighboring gene uncharacterized LOC106783202 Neighboring gene uncharacterized LOC111773503 Neighboring gene CD1a5 molecule Neighboring gene CD1a4 molecule

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The equine CD1 gene family is the largest and most diverse yet identified. Dossa RG, et al. Immunogenetics, 2014 Jan. PMID 24196432
  2. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endogenous lipid antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables exogenous lipid antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation, endogenous lipid antigen via MHC class Ib IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in antigen processing and presentation, exogenous lipid antigen via MHC class Ib IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell mediated cytotoxicity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CD1a6 molecule
Names
CD1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001252303.1 → NP_001239232.1  CD1a6 molecule precursor

    See identical proteins and their annotated locations for NP_001239232.1

    Status: PROVISIONAL

    Source sequence(s)
    JF749871
    UniProtKB/TrEMBL
    G3FP04
    Conserved Domains (2) summary
    cd07698
    Location:204 → 296
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam16497
    Location:19 → 198
    MHC_I_3; MHC-I family domain

RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009148.3 Reference EquCab3.0 Primary Assembly

    Range
    35693535..35700257 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023640259.1 → XP_023496027.1  CD1a6 molecule isoform X1

    UniProtKB/TrEMBL
    A0A9L0TEY6
    Related
    ENSECAP00000085702.1, ENSECAT00000094180.1
    Conserved Domains (2) summary
    cd07698
    Location:263 → 355
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam16497
    Location:80 → 257
    MHC_I_3; MHC-I family domain

  2. XM_023640261.1 → XP_023496029.1  CD1a6 molecule isoform X3

    UniProtKB/TrEMBL
    A0A9L0RXH4
    Conserved Domains (2) summary
    cd07698
    Location:246 → 338
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam16497
    Location:61 → 240
    MHC_I_3; MHC-I family domain

  3. XM_005609928.3 → XP_005609985.1  CD1a6 molecule isoform X4

    UniProtKB/TrEMBL
    A0A9L0RXH4
    Related
    ENSECAP00000066514.1, ENSECAT00000092534.1
    Conserved Domains (2) summary
    cd07698
    Location:238 → 330
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam16497
    Location:53 → 232
    MHC_I_3; MHC-I family domain

  4. XM_023640260.1 → XP_023496028.1  CD1a6 molecule isoform X2

    UniProtKB/TrEMBL
    A0A9L0TEY6
    Conserved Domains (2) summary
    cd07698
    Location:255 → 347
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam16497
    Location:72 → 249
    MHC_I_3; MHC-I family domain

  5. XM_023640262.1 → XP_023496030.1  CD1a6 molecule isoform X5

    Conserved Domains (2) summary
    cd07698
    Location:221 → 313
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam16497
    Location:38 → 215
    MHC_I_3; MHC-I family domain

  6. XM_014739699.2 → XP_014595185.1  CD1a6 molecule isoform X6

    Conserved Domains (2) summary
    cd07698
    Location:204 → 296
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam16497
    Location:19 → 198
    MHC_I_3; MHC-I family domain
Nucleotide Protein
Heading Accession and Version

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