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SYT12 synaptotagmin 12 [ Equus caballus (horse) ]

Gene ID: 100052905, updated on 8-Mar-2024

Summary

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Official Symbol
SYT12provided by VGNC
Official Full Name
synaptotagmin 12provided by VGNC
Primary source
VGNC:VGNC:23818
See related
Ensembl:ENSECAG00000025014
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 12 NC_009155.3 (30604757..30624957)
102 previous assembly EquCab2.0 (GCF_000002305.2) 12 NC_009155.2 (26890661..26910801)

Chromosome 12 - NC_009155.3Genomic Context describing neighboring genes Neighboring gene leucine rich repeat and fibronectin type III domain containing 4 Neighboring gene pyruvate carboxylase Neighboring gene chromosome 12 C11orf86 homolog Neighboring gene uncharacterized LOC111775982 Neighboring gene uncharacterized LOC102147408 Neighboring gene ras homolog family member D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylserine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium-ion regulated exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to calcium ion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of calcium ion-dependent exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of dopamine secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptotagmin-12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009155.3 Reference EquCab3.0 Primary Assembly

    Range
    30604757..30624957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023654537.1 → XP_023510305.1  synaptotagmin-12 isoform X1

    UniProtKB/TrEMBL
    A0A5F5PUJ6
    Conserved Domains (2) summary
    cd08406
    Location:297 → 432
    C2B_Synaptotagmin-12; C2 domain second repeat present in Synaptotagmin 12
    cl14603
    Location:165 → 276
    C2; C2 domain

  2. XM_001497062.6 → XP_001497112.1  synaptotagmin-12 isoform X2

    See identical proteins and their annotated locations for XP_001497112.1

    UniProtKB/TrEMBL
    F6RKV7
    Conserved Domains (2) summary
    cd08406
    Location:284 → 419
    C2B_Synaptotagmin-12; C2 domain second repeat present in Synaptotagmin 12
    cl14603
    Location:152 → 263
    C2; C2 domain

  3. XM_023654536.1 → XP_023510304.1  synaptotagmin-12 isoform X1

    UniProtKB/TrEMBL
    A0A5F5PUJ6
    Related
    ENSECAP00000052048.2, ENSECAT00000071630.2
    Conserved Domains (2) summary
    cd08406
    Location:297 → 432
    C2B_Synaptotagmin-12; C2 domain second repeat present in Synaptotagmin 12
    cl14603
    Location:165 → 276
    C2; C2 domain

  4. XM_023654539.1 → XP_023510307.1  synaptotagmin-12 isoform X2

    UniProtKB/TrEMBL
    F6RKV7
    Related
    ENSECAP00000022581.3, ENSECAT00000026999.4
    Conserved Domains (2) summary
    cd08406
    Location:284 → 419
    C2B_Synaptotagmin-12; C2 domain second repeat present in Synaptotagmin 12
    cl14603
    Location:152 → 263
    C2; C2 domain
Nucleotide Protein
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