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IKZF1 IKAROS family zinc finger 1 [ Equus caballus (horse) ]

Gene ID: 100052437, updated on 17-Aug-2024

Summary

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Official Symbol
IKZF1provided by VGNC
Official Full Name
IKAROS family zinc finger 1provided by VGNC
Primary source
VGNC:VGNC:18987
See related
Ensembl:ENSECAG00000018339
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 4 NC_009147.3 (20122309..20219653)

Chromosome 4 - NC_009147.3Genomic Context describing neighboring genes Neighboring gene sperm microtubule inner protein 7 Neighboring gene DNA polymerase beta pseudogene Neighboring gene uncharacterized LOC102149774 Neighboring gene fidgetin like 1 Neighboring gene dopa decarboxylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009147.3 Chromosome 4 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein Ikaros
Names
IKAROS family zinc finger 1 (Ikaros)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009147.3 Reference EquCab3.0 Primary Assembly

    Range
    20122309..20219653
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023639052.1 → XP_023494820.1  DNA-binding protein Ikaros isoform X3

    UniProtKB/TrEMBL
    F7A5Z4
    Related
    ENSECAP00000016131.4, ENSECAT00000019692.4
    Conserved Domains (2) summary
    sd00017
    Location:139 → 159
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:152 → 176
    zf-H2C2_2; Zinc-finger double domain

  2. XM_023639055.1 → XP_023494823.1  DNA-binding protein Ikaros isoform X6

    UniProtKB/TrEMBL
    A0A5F5Q013
    Conserved Domains (2) summary
    sd00017
    Location:139 → 159
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:152 → 176
    zf-H2C2_2; Zinc-finger double domain

  3. XM_023639057.1 → XP_023494825.1  DNA-binding protein Ikaros isoform X8

    UniProtKB/TrEMBL
    A0A5F5Q013
    Conserved Domains (2) summary
    sd00017
    Location:139 → 159
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:152 → 176
    zf-H2C2_2; Zinc-finger double domain

  4. XM_023639062.1 → XP_023494830.1  DNA-binding protein Ikaros isoform X13

    UniProtKB/TrEMBL
    A0A5F5PT29
    Conserved Domains (4) summary
    COG5048
    Location:1 → 112
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:60 → 80
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:58 → 80
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:72 → 97
    zf-H2C2_2; Zinc-finger double domain

  5. XM_023639054.1 → XP_023494822.1  DNA-binding protein Ikaros isoform X5

    UniProtKB/TrEMBL
    F7A5Z4
    Conserved Domains (2) summary
    sd00017
    Location:139 → 159
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:152 → 176
    zf-H2C2_2; Zinc-finger double domain

  6. XM_023639050.1 → XP_023494818.1  DNA-binding protein Ikaros isoform X1

    UniProtKB/TrEMBL
    A0A5F5PFB7, F7A5Z4
    Conserved Domains (2) summary
    sd00017
    Location:139 → 159
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:152 → 176
    zf-H2C2_2; Zinc-finger double domain

  7. XM_023639060.1 → XP_023494828.1  DNA-binding protein Ikaros isoform X11

    UniProtKB/TrEMBL
    A0A5F5PT29
    Conserved Domains (2) summary
    COG5048
    Location:1 → 131
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:60 → 80
    ZF_C2H2; C2H2 Zn finger [structural motif]

  8. XM_023639051.1 → XP_023494819.1  DNA-binding protein Ikaros isoform X2

    UniProtKB/TrEMBL
    A0A5F5PEI1
    Conserved Domains (2) summary
    sd00017
    Location:130 → 150
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:143 → 167
    zf-H2C2_2; Zinc-finger double domain

  9. XM_023639059.1 → XP_023494827.1  DNA-binding protein Ikaros isoform X10

    UniProtKB/TrEMBL
    A0A5F5PYD2, A0A5F5Q013
    Related
    ENSECAP00000052766.1, ENSECAT00000066461.2
    Conserved Domains (2) summary
    sd00017
    Location:119 → 139
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:132 → 156
    zf-H2C2_2; Zinc-finger double domain

  10. XM_023639056.1 → XP_023494824.1  DNA-binding protein Ikaros isoform X7

    UniProtKB/TrEMBL
    A0A5F5PRC6, A0A5F5Q013
    Related
    ENSECAP00000051028.2, ENSECAT00000074005.2
    Conserved Domains (2) summary
    sd00017
    Location:119 → 139
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:132 → 156
    zf-H2C2_2; Zinc-finger double domain

  11. XM_023639053.1 → XP_023494821.1  DNA-binding protein Ikaros isoform X4

    UniProtKB/TrEMBL
    A0A5F5PEI1, A0A5F5PW16
    Related
    ENSECAP00000052695.2, ENSECAT00000074629.2
    Conserved Domains (2) summary
    sd00017
    Location:119 → 139
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:132 → 156
    zf-H2C2_2; Zinc-finger double domain

  12. XM_023639058.1 → XP_023494826.1  DNA-binding protein Ikaros isoform X9

    UniProtKB/TrEMBL
    A0A5F5PQW0, A0A5F5PT29
    Related
    ENSECAP00000050742.2, ENSECAT00000066428.2
    Conserved Domains (2) summary
    COG5048
    Location:1 → 131
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:60 → 80
    ZF_C2H2; C2H2 Zn finger [structural motif]

  13. XM_023639061.1 → XP_023494829.1  DNA-binding protein Ikaros isoform X12

    UniProtKB/TrEMBL
    A0A5F5PT29
    Conserved Domains (4) summary
    COG5048
    Location:1 → 112
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:60 → 80
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:58 → 80
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:72 → 97
    zf-H2C2_2; Zinc-finger double domain

  14. XM_001498097.5 → XP_001498147.2  DNA-binding protein Ikaros isoform X1

    UniProtKB/TrEMBL
    A0A5F5PFB7, F7A5Z4
    Related
    ENSECAP00000047125.2, ENSECAT00000072329.2
    Conserved Domains (2) summary
    sd00017
    Location:139 → 159
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:152 → 176
    zf-H2C2_2; Zinc-finger double domain

  15. XM_003364763.4 → XP_003364811.1  DNA-binding protein Ikaros isoform X4

    UniProtKB/TrEMBL
    A0A5F5PEI1, A0A5F5PW16
    Related
    ENSECAP00000054243.1, ENSECAT00000074980.2
    Conserved Domains (2) summary
    sd00017
    Location:119 → 139
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:132 → 156
    zf-H2C2_2; Zinc-finger double domain

  16. XM_014738925.2 → XP_014594411.1  DNA-binding protein Ikaros isoform X1

    UniProtKB/TrEMBL
    A0A5F5PFB7, F7A5Z4
    Conserved Domains (2) summary
    sd00017
    Location:139 → 159
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:152 → 176
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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