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TRIM55 tripartite motif containing 55 [ Equus caballus (horse) ]

Gene ID: 100052338, updated on 8-Mar-2024

Summary

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Official Symbol
TRIM55provided by VGNC
Official Full Name
tripartite motif containing 55provided by VGNC
Primary source
VGNC:VGNC:24516
See related
Ensembl:ENSECAG00000014370
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See TRIM55 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 9 NC_009152.3 (19604920..19650940, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 9 NC_009152.2 (19015556..19060774, complement)

Chromosome 9 - NC_009152.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111774934 Neighboring gene corticotropin releasing hormone Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene transfer RNA tyrosine (anticodon GUA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tripartite motif-containing protein 55

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009152.3 Reference EquCab3.0 Primary Assembly

    Range
    19604920..19650940 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023648523.1 → XP_023504291.1  tripartite motif-containing protein 55 isoform X4

    UniProtKB/TrEMBL
    A0A3Q2I259, A0A9L0SFS4
    Related
    ENSECAP00000072857.1, ENSECAT00000148601.1
    Conserved Domains (3) summary
    pfam00643
    Location:119 → 161
    zf-B_box; B-box zinc finger
    cd16760
    Location:21 → 84
    RING-HC_MuRF2; RING finger, HC subclass, found in muscle-specific RING finger protein 2 (MuRF-2) and similar proteins
    cl25407
    Location:168 → 294
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

  2. XM_014727991.2 → XP_014583477.1  tripartite motif-containing protein 55 isoform X1

    UniProtKB/TrEMBL
    A0A9L0RRG2, A0A9L0TQS2
    Related
    ENSECAP00000064335.1, ENSECAT00000117402.1
    Conserved Domains (3) summary
    cd00162
    Location:26 → 85
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam00643
    Location:119 → 161
    zf-B_box; B-box zinc finger
    cl23765
    Location:168 → 294
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  3. XM_023648522.1 → XP_023504290.1  tripartite motif-containing protein 55 isoform X3

    UniProtKB/TrEMBL
    A0A9L0TQS2
    Conserved Domains (3) summary
    pfam00643
    Location:119 → 161
    zf-B_box; B-box zinc finger
    cd16760
    Location:21 → 84
    RING-HC_MuRF2; RING finger, HC subclass, found in muscle-specific RING finger protein 2 (MuRF-2) and similar proteins
    cl25407
    Location:168 → 294
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

  4. XM_014727993.2 → XP_014583479.1  tripartite motif-containing protein 55 isoform X2

    UniProtKB/TrEMBL
    A0A9L0TMU4, A0A9L0TQS2
    Related
    ENSECAP00000088341.1, ENSECAT00000110116.1
    Conserved Domains (3) summary
    cd00162
    Location:26 → 85
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam00643
    Location:119 → 161
    zf-B_box; B-box zinc finger
    cl23765
    Location:168 → 294
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
Nucleotide Protein
Heading Accession and Version

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