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NPTN neuroplastin [ Equus caballus (horse) ]

Gene ID: 100052106, updated on 8-Mar-2024

Summary

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Official Symbol
NPTNprovided by VGNC
Official Full Name
neuroplastinprovided by VGNC
Primary source
VGNC:VGNC:20850
See related
Ensembl:ENSECAG00000008148
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See NPTN in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 1 NC_009144.3 (121042919..121108414)
102 previous assembly EquCab2.0 (GCF_000002305.2) 1 NC_009144.2 (119901817..119973088)

Chromosome 1 - NC_009144.3Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 21 Neighboring gene inhibitory synaptic factor 1 Neighboring gene CD276 molecule Neighboring gene REC114 meiotic recombination protein Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 4 Neighboring gene neogenin 1 Neighboring gene uncharacterized LOC111775939

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite self-avoidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuroplastin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009144.3 Reference EquCab3.0 Primary Assembly

    Range
    121042919..121108414
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023654032.1 → XP_023509800.1  neuroplastin isoform X2

    Conserved Domains (3) summary
    pfam13927
    Location:33 → 120
    Ig_3; Immunoglobulin domain
    cl11960
    Location:168 → 219
    Ig; Immunoglobulin domain
    cl28434
    Location:250 → 333
    I-set; Immunoglobulin I-set domain

  2. XM_023654031.1 → XP_023509799.1  neuroplastin isoform X1

    UniProtKB/TrEMBL
    A0A3Q2KVZ1
    Related
    ENSECAP00000028492.2, ENSECAT00000064448.3
    Conserved Domains (3) summary
    pfam13927
    Location:33 → 120
    Ig_3; Immunoglobulin domain
    cl11960
    Location:168 → 219
    Ig; Immunoglobulin domain
    cl28434
    Location:250 → 333
    I-set; Immunoglobulin I-set domain

RNA

  1. XR_002811883.1 RNA Sequence

    Related
    ENSECAT00000090870.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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