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CEP290 centrosomal protein 290 [ Equus caballus (horse) ]

Gene ID: 100051209, updated on 8-Mar-2024

Summary

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Official Symbol
CEP290provided by VGNC
Official Full Name
centrosomal protein 290provided by VGNC
Primary source
VGNC:VGNC:16415
See related
Ensembl:ENSECAG00000020694
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CEP290 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
59
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 28 NC_009171.3 (15354269..15441476, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 28 NC_009171.2 (14322602..14409808, complement)

Chromosome 28 - NC_009171.3Genomic Context describing neighboring genes Neighboring gene chromosome 28 C12orf50 homolog Neighboring gene uncharacterized LOC111771021 Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene transmembrane O-mannosyltransferase targeting cadherins 3 Neighboring gene uncharacterized LOC111771107

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
centrosomal protein of 290 kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001308368.1 → NP_001295297.1  centrosomal protein of 290 kDa

    Status: VALIDATED

    Source sequence(s)
    PJAA01000029
    UniProtKB/TrEMBL
    F6WFW1
    Related
    ENSECAP00000043270.3, ENSECAT00000057127.3
    Conserved Domains (4) summary
    COG1196
    Location:1641 → 2364
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:1071 → 1891
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam06273
    Location:85 → 133
    eIF-4B; Plant specific eukaryotic initiation factor 4B
    pfam16574
    Location:1290 → 1417
    CEP209_CC5; Coiled-coil region of centrosome protein CE290

RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009171.3 Reference EquCab3.0 Primary Assembly

    Range
    15354269..15441476 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023630993.1 → XP_023486761.1  centrosomal protein of 290 kDa isoform X2

    UniProtKB/TrEMBL
    A0A3Q2H4M9
    Related
    ENSECAP00000028238.1, ENSECAT00000051398.2
    Conserved Domains (2) summary
    pfam16574
    Location:1283 → 1410
    CEP209_CC5; Coiled-coil region of centrosome protein CE290
    cl25732
    Location:86 → 988
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_023630992.1 → XP_023486760.1  centrosomal protein of 290 kDa isoform X1

    UniProtKB/TrEMBL
    A0A3Q2H0E4, A0A3Q2H8Q3
    Related
    ENSECAP00000030325.2, ENSECAT00000048692.3
    Conserved Domains (2) summary
    pfam16574
    Location:1570 → 1697
    CEP209_CC5; Coiled-coil region of centrosome protein CE290
    cl25732
    Location:1921 → 2644
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_023630994.1 → XP_023486762.1  centrosomal protein of 290 kDa isoform X3

    UniProtKB/TrEMBL
    F6WFW1
    Related
    ENSECAP00000018792.4, ENSECAT00000022721.4
    Conserved Domains (2) summary
    pfam16574
    Location:1283 → 1410
    CEP209_CC5; Coiled-coil region of centrosome protein CE290
    cl25732
    Location:1634 → 2357
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_023630995.1 → XP_023486763.1  centrosomal protein of 290 kDa isoform X4

    UniProtKB/TrEMBL
    A0A3Q2I5W6
    Conserved Domains (2) summary
    pfam16574
    Location:1052 → 1179
    CEP209_CC5; Coiled-coil region of centrosome protein CE290
    cl25732
    Location:1403 → 2126
    SMC_N; RecF/RecN/SMC N terminal domain

  5. XM_023630996.1 → XP_023486764.1  centrosomal protein of 290 kDa isoform X5

    Conserved Domains (2) summary
    pfam16574
    Location:1570 → 1697
    CEP209_CC5; Coiled-coil region of centrosome protein CE290
    cl25732
    Location:1351 → 2171
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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