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GRAMD4 GRAM domain containing 4 [ Equus caballus (horse) ]

Gene ID: 100049911, updated on 17-Aug-2024

Summary

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Official Symbol
GRAMD4provided by VGNC
Official Full Name
GRAM domain containing 4provided by VGNC
Primary source
VGNC:VGNC:52394
See related
Ensembl:ENSECAG00000019570
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 28
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 28 NC_009171.3 (43547414..43630890)

Chromosome 28 - NC_009171.3Genomic Context describing neighboring genes Neighboring gene tRNA mitochondrial 2-thiouridylase Neighboring gene cadherin EGF LAG seven-pass G-type receptor 1 Neighboring gene ceramide kinase Neighboring gene microRNA mir-9020

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009171.3 Chromosome 28 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of toll-like receptor 9 signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cysteine-type endopeptidase activity involved in apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GRAM domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009171.3 Reference EquCab3.0 Primary Assembly

    Range
    43547414..43630890
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023631342.1 → XP_023487110.1  GRAM domain-containing protein 4 isoform X2

    UniProtKB/TrEMBL
    F7BUH3
    Related
    ENSECAP00000029957.3, ENSECAT00000053801.3
    Conserved Domains (2) summary
    cd13221
    Location:499 → 604
    PH-GRAM_GRAMDC4; GRAM domain-containing protein 4 (GRAMDC4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cl25545
    Location:122 → 177
    V-ATPase_G_2; Vacuolar (H+)-ATPase G subunit

  2. XM_023631343.1 → XP_023487111.1  GRAM domain-containing protein 4 isoform X3

    UniProtKB/TrEMBL
    F7BUH3
    Conserved Domains (2) summary
    cd13221
    Location:491 → 596
    PH-GRAM_GRAMDC4; GRAM domain-containing protein 4 (GRAMDC4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cl25545
    Location:114 → 169
    V-ATPase_G_2; Vacuolar (H+)-ATPase G subunit

  3. XM_023631344.1 → XP_023487112.1  GRAM domain-containing protein 4 isoform X4

    UniProtKB/TrEMBL
    A0A9L0RXK2
    Conserved Domains (2) summary
    cd13221
    Location:473 → 578
    PH-GRAM_GRAMDC4; GRAM domain-containing protein 4 (GRAMDC4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cl25545
    Location:96 → 151
    V-ATPase_G_2; Vacuolar (H+)-ATPase G subunit

  4. XM_023631341.1 → XP_023487109.1  GRAM domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A5F5PSB8
    Related
    ENSECAP00000032100.2, ENSECAT00000063164.2
    Conserved Domains (2) summary
    cd13221
    Location:460 → 565
    PH-GRAM_GRAMDC4; GRAM domain-containing protein 4 (GRAMDC4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    cl25545
    Location:96 → 151
    V-ATPase_G_2; Vacuolar (H+)-ATPase G subunit
Nucleotide Protein
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