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Vha55 V-type proton ATPase subunit Vha55 [ Bombyx mori (domestic silkworm) ]

Gene ID: 100037422, updated on 16-May-2024

Summary

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Gene symbol
Vha55
Gene description
V-type proton ATPase subunit Vha55
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bombyx mori
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
Orthologs
fruit fly all
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Genomic context

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See Vha55 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 26 NC_085132.1 (9548664..9558499, complement)
103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 26 NC_051383.1 (9444404..9454000, complement)

Chromosome 26 - NC_085132.1Genomic Context describing neighboring genes Neighboring gene ecdysis triggering hormone receptor Neighboring gene uncharacterized LOC134201487 Neighboring gene uncharacterized LOC101741335 Neighboring gene uncharacterized LOC101744854 Neighboring gene 4-hydroxybutyrate coenzyme A transferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization and localization of the vacuolar-type ATPase in the midgut cells of silkworm (Bombyx mori). Yang H, et al. Z Naturforsch C J Biosci, 2009 Nov-Dec. PMID 20158164
  2. Large scale full-length cDNA sequencing reveals a unique genomic landscape in a lepidopteran model insect, Bombyx mori. Suetsugu Y, et al. G3 (Bethesda), 2013 Sep 4. PMID 23821615, Free PMC Article
  3. Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis. Ou J, et al. BMC Genomics, 2014 Sep 27. PMID 25261999, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ATP metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuolar acidification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proton-transporting V-type ATPase, V1 domain IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V-type proton ATPase subunit Vha55; vacuolar ATP synthase subunit B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098358.1 → NP_001091828.1  V-type proton ATPase subunit Vha55

    See identical proteins and their annotated locations for NP_001091828.1

    Status: PROVISIONAL

    Source sequence(s)
    EF107513
    UniProtKB/TrEMBL
    A1E4A8
    Conserved Domains (4) summary
    cd01135
    Location:101 → 385
    V_A-ATPase_B; V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi ...
    TIGR01040
    Location:29 → 488
    V-ATPase_V1_B; V-type (H+)-ATPase V1, B subunit
    pfam00306
    Location:401 → 483
    ATP-synt_ab_C; ATP synthase alpha/beta chain, C terminal domain
    pfam02874
    Location:33 → 99
    ATP-synt_ab_N; ATP synthase alpha/beta family, beta-barrel domain

RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3026992v2 Primary Assembly

Genomic

  1. NC_085132.1 Reference ASM3026992v2 Primary Assembly

    Range
    9548664..9558499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062676233.1 → XP_062532217.1  vacuolar ATP synthase subunit B isoform X1

RNA

  1. XR_005246340.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases