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si:dkey-78l4.11 si:dkey-78l4.11 [ Danio rerio (zebrafish) ]

Gene ID: 100034478, updated on 7-Sep-2023

Summary

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Official Symbol
si:dkey-78l4.11provided by ZNC
Official Full Name
si:dkey-78l4.11provided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-269
See related
Ensembl:ENSDARG00000071381 AllianceGenome:ZFIN:ZDB-GENE-060503-269
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See si:dkey-78l4.11 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (19504197..19505290, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (19479207..19480312, complement)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene si:dkey-78l4.10 Neighboring gene duodenase-1-like Neighboring gene si:dkey-78l4.12 Neighboring gene arginine esterase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
LOW QUALITY PROTEIN: granzyme-like protein 1; granzyme-like protein 1; uncharacterized protein LOC100034478

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    19504197..19505290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017353244.2 → XP_017208733.1  granzyme-like protein 1

    UniProtKB/TrEMBL
    A0A8M6Z3F7
    Related
    ENSDARP00000096262.4, ENSDART00000105489.6

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395102.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    227539..228717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473484.1 → XP_021329159.1  LOW QUALITY PROTEIN: granzyme-like protein 1

    UniProtKB/TrEMBL
    A0A8M9PWH3
    Conserved Domains (1) summary
    cd00190
    Location:25 → 244
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
Nucleotide Protein
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