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golt1ba golgi transport 1Ba [ Danio rerio (zebrafish) ]

Gene ID: 100034417, updated on 27-Mar-2024

Summary

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Official Symbol
golt1baprovided by ZNC
Official Full Name
golgi transport 1Baprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041210-157
See related
Ensembl:ENSDARG00000022795 AllianceGenome:ZFIN:ZDB-GENE-041210-157
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-13i19.9
Summary
Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and membrane. Orthologous to human GOLT1B (golgi transport 1B). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See golt1ba in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (16786553..16792220)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (16797711..16803227)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103910436 Neighboring gene uncharacterized LOC100535500 Neighboring gene short transmembrane mitochondrial protein 1 Neighboring gene spexin hormone Neighboring gene glycogen synthase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A novel neuropeptide in suppressing luteinizing hormone release in goldfish, Carassius auratus. Liu Y, et al. Mol Cell Endocrinol, 2013 Jul 15. PMID 23623870
  2. Regulation of spermatogonial development by Fsh: The complementary roles of locally produced Igf and Wnt signaling molecules in adult zebrafish testis. Safian D, et al. Gen Comp Endocrinol, 2019 Dec 1. PMID 31415728
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
golgi transport 1Ba; vesicle transport protein GOT1B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001327840.1 → NP_001314769.1  golgi transport 1Ba

    Status: VALIDATED

    Source sequence(s)
    BX649476, EH551832, EH568857
    UniProtKB/TrEMBL
    A0A8M1P3U1, E9QIY9
    Related
    ENSDARP00000029846.6, ENSDART00000039027.6
    Conserved Domains (1) summary
    cl02130
    Location:4 → 116
    Got1; Got1/Sft2-like family

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    16786553..16792220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005164773.4 → XP_005164830.1  vesicle transport protein GOT1B isoform X1

    UniProtKB/TrEMBL
    A0A8M2BC46
    Conserved Domains (1) summary
    cl02130
    Location:4 → 116
    Got1; Got1/Sft2-like family
Nucleotide Protein Strain
Heading Accession and Version

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