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GFAP glial fibrillary acidic protein [ Equus caballus (horse) ]

Gene ID: 100033970, updated on 8-Mar-2024

Summary

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Official Symbol
GFAPprovided by VGNC
Official Full Name
glial fibrillary acidic proteinprovided by VGNC
Primary source
VGNC:VGNC:18310
See related
Ensembl:ENSECAG00000010023
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
10
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 11 NC_009154.3 (18815101..18824260)
102 previous assembly EquCab2.0 (GCF_000002305.2) 11 NC_009154.2 (18751386..18760544)

Chromosome 11 - NC_009154.3Genomic Context describing neighboring genes Neighboring gene complement C1q like 1 Neighboring gene kinesin family member 18B Neighboring gene Ig-like V-type domain-containing protein FAM187A Neighboring gene coiled-coil domain containing 103

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of chaperone-mediated autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glial fibrillary acidic protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163861.1 → NP_001157333.1  glial fibrillary acidic protein

    See identical proteins and their annotated locations for NP_001157333.1

    Status: PROVISIONAL

    Source sequence(s)
    PJAA01000012
    UniProtKB/TrEMBL
    A0A5F5PVW3
    Related
    ENSECAP00000052767.2, ENSECAT00000075799.2
    Conserved Domains (2) summary
    pfam00038
    Location:63 → 371
    Filament; Intermediate filament protein
    pfam04732
    Location:4 → 61
    Filament_head; Intermediate filament head (DNA binding) region

RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009154.3 Reference EquCab3.0 Primary Assembly

    Range
    18815101..18824260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005597018.3 → XP_005597075.1  glial fibrillary acidic protein isoform X1

    See identical proteins and their annotated locations for XP_005597075.1

    UniProtKB/TrEMBL
    A0A5F5PYM4
    Related
    ENSECAP00000053495.1, ENSECAT00000073943.2
    Conserved Domains (2) summary
    pfam00038
    Location:63 → 371
    Filament; Intermediate filament protein
    pfam04732
    Location:4 → 61
    Filament_head; Intermediate filament head (DNA binding) region

  2. XM_023651587.1 → XP_023507355.1  glial fibrillary acidic protein isoform X2

    UniProtKB/TrEMBL
    A0A5F5PVW3
    Related
    ENSECAP00000049457.2, ENSECAT00000067936.2
    Conserved Domains (2) summary
    pfam00038
    Location:63 → 371
    Filament; Intermediate filament protein
    pfam04732
    Location:4 → 61
    Filament_head; Intermediate filament head (DNA binding) region
Nucleotide Protein
Heading Accession and Version

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