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SOX9 SRY-box transcription factor 9 [ Equus caballus (horse) ]

Gene ID: 100033908, updated on 8-Mar-2024

Summary

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Official Symbol
SOX9provided by VGNC
Official Full Name
SRY-box transcription factor 9provided by VGNC
Primary source
VGNC:VGNC:56489
See related
Ensembl:ENSECAG00000022037
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See SOX9 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 11 NC_009154.3 (9223807..9229236, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 11 NC_009154.2 (9234521..9240121, complement)

Chromosome 11 - NC_009154.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111775596 Neighboring gene uncharacterized LOC111775598 Neighboring gene uncharacterized LOC111775597 Neighboring gene uncharacterized LOC111775761 Neighboring gene uncharacterized LOC111775762

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondrocyte differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in morphogenesis of an epithelium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligodendrocyte differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of chondrocyte differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-9
Names
SRY (sex determining region Y)-box 9
SRY-box 9
sex determining region Y-box 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009154.3 Reference EquCab3.0 Primary Assembly

    Range
    9223807..9229236 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023652130.1 → XP_023507898.1  transcription factor SOX-9

    UniProtKB/TrEMBL
    F6XLD1
    Related
    ENSECAP00000019514.3, ENSECAT00000023552.3
    Conserved Domains (2) summary
    cd01388
    Location:104 → 174
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam12444
    Location:22 → 94
    Sox_N; Sox developmental protein N terminal
Nucleotide Protein
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