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PXDN peroxidasin [ Monodelphis domestica (gray short-tailed opossum) ]

Gene ID: 100032348, updated on 6-Jun-2024

Summary

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Gene symbol
PXDN
Gene description
peroxidasin
See related
EnsemblRapid:ENSMODG00000014304
Gene type
protein coding
RefSeq status
MODEL
Organism
Monodelphis domestica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
Orthologs
human mouse all
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Genomic context

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See PXDN in Genome Data Viewer
Location:
chromosome: 1
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 1 NC_077227.1 (550942830..551111358)
103 previous assembly MonDom5 (GCF_000002295.2) 1 NC_008801.1 (542565717..542733975)

Chromosome 1 - NC_077227.1Genomic Context describing neighboring genes Neighboring gene myelin transcription factor 1 like Neighboring gene uncharacterized LOC130456522 Neighboring gene ribonuclease H1-like Neighboring gene uncharacterized LOC103106236 Neighboring gene thyroid peroxidase Neighboring gene syntrophin gamma 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxidasin homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMonDom1.pri

Genomic

  1. NC_077227.1 Reference mMonDom1.pri

    Range
    550942830..551111358
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001381344.5 → XP_001381381.2  peroxidasin homolog isoform X1

    UniProtKB/TrEMBL
    A0A5F8H2A6, F6W4P8
    Related
    ENSMODP00000017876.3, ENSMODT00000018205.4
    Conserved Domains (12) summary
    cd05745
    Location:453 → 526
    Ig3_Peroxidasin; Third immunoglobulin (Ig)-like domain of peroxidasin
    cd05746
    Location:549 → 617
    Ig4_Peroxidasin; Fourth immunoglobulin (Ig)-like domain of peroxidasin
    cd09826
    Location:871 → 1310
    peroxidasin_like; Animal heme peroxidase domain of peroxidasin and related proteins
    pfam07679
    Location:440 → 526
    I-set; Immunoglobulin I-set domain
    sd00031
    Location:119 → 142
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:73 → 94
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00093
    Location:1427 → 1477
    VWC; von Willebrand factor type C domain
    pfam03098
    Location:748 → 1289
    An_peroxidase; Animal haem peroxidase
    pfam12799
    Location:117 → 158
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:118 → 177
    LRR_8; Leucine rich repeat
    cl11960
    Location:253 → 340
    Ig; Immunoglobulin domain
    cl15307
    Location:199 → 250
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  2. XM_056813382.1 → XP_056669360.1  peroxidasin homolog isoform X2

    UniProtKB/TrEMBL
    A0A5F8H4D7
    Related
    ENSMODP00000054753.2, ENSMODT00000059659.2
Nucleotide Protein
Heading Accession and Version

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