U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TRIM40 tripartite motif containing 40 [ Monodelphis domestica (gray short-tailed opossum) ]

Gene ID: 100023777, updated on 8-May-2024

Summary

Go to the top of the page Help
Gene symbol
TRIM40
Gene description
tripartite motif containing 40
See related
EnsemblRapid:ENSMODG00000023828
Gene type
protein coding
RefSeq status
MODEL
Organism
Monodelphis domestica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TRIM40 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 2 NC_077228.1 (265431348..265441809)
103 previous assembly MonDom5 (GCF_000002295.2) 2 NC_008802.1 (266447769..266459552)

Chromosome 2 - NC_077228.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase I subunit H Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 11 Neighboring gene ring finger protein 39 Neighboring gene tripartite motif containing 10 Neighboring gene tripartite motif containing 15

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
E3 ubiquitin ligase TRIM40

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMonDom1.pri

Genomic

  1. NC_077228.1 Reference mMonDom1.pri

    Range
    265431348..265441809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007483466.2 → XP_007483528.1  E3 ubiquitin ligase TRIM40

    See identical proteins and their annotated locations for XP_007483528.1

    UniProtKB/TrEMBL
    F6UQ46
    Related
    ENSMODP00000079277.1, ENSMODT00000142665.1
    Conserved Domains (2) summary
    cd00162
    Location:14 → 60
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cl19219
    Location:134 → 223
    DUF342; Protein of unknown function (DUF342)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.