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SMARCA1 SNF2 related chromatin remodeling ATPase 1 [ Monodelphis domestica (gray short-tailed opossum) ]

Gene ID: 100021449, updated on 20-Sep-2024

Summary

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Gene symbol
SMARCA1
Gene description
SNF2 related chromatin remodeling ATPase 1
See related
EnsemblRapid:ENSMODG00000053751
Gene type
protein coding
RefSeq status
MODEL
Organism
Monodelphis domestica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_05 current mMonDom1.pri (GCF_027887165.1) X NC_077235.1 (53755466..53905543)
103 previous assembly MonDom5 (GCF_000002295.2) X NC_008809.1 (30864122..31013804, complement)

Chromosome X - NC_077235.1Genomic Context describing neighboring genes Neighboring gene OCRL inositol polyphosphate-5-phosphatase Neighboring gene uncharacterized LOC103106180 Neighboring gene ETS-related transcription factor Elf-4-like Neighboring gene FMR1-interacting protein NUFIP2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable global transcription activator SNF2L1
Names
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMonDom1.pri

Genomic

  1. NC_077235.1 Reference mMonDom1.pri

    Range
    53755466..53905543
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007507156.3 → XP_007507218.1  probable global transcription activator SNF2L1

    UniProtKB/TrEMBL
    A0A5F8GHT8
    Related
    ENSMODP00000062233.1, ENSMODT00000102050.1
    Conserved Domains (7) summary
    PLN03142
    Location:8 → 1037
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd00046
    Location:183 → 322
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00167
    Location:827 → 866
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00271
    Location:465 → 580
    Helicase_C; Helicase conserved C-terminal domain
    pfam09110
    Location:726 → 810
    HAND; HAND
    pfam09111
    Location:881 → 993
    SLIDE; SLIDE
    pfam13892
    Location:64 → 90
    DBINO; DNA-binding domain
Nucleotide Protein
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