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NUP50 nucleoporin 50 [ Monodelphis domestica (gray short-tailed opossum) ]

Gene ID: 100013757, updated on 8-May-2024

Summary

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Gene symbol
NUP50
Gene description
nucleoporin 50
See related
EnsemblRapid:ENSMODG00000007116
Gene type
protein coding
RefSeq status
MODEL
Organism
Monodelphis domestica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
Orthologs
human mouse all
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Genomic context

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See NUP50 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 5 NC_077231.1 (13394958..13420076, complement)
103 previous assembly MonDom5 (GCF_000002295.2) 8 NC_008808.1 (10415259..10442627)

Chromosome 5 - NC_077231.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103106277 Neighboring gene uroplakin 3A Neighboring gene KIAA0930 ortholog Neighboring gene PHD finger protein 21B Neighboring gene uncharacterized LOC103093436 Neighboring gene Rho GTPase activating protein 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear pore complex protein Nup50

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMonDom1.pri

Genomic

  1. NC_077231.1 Reference mMonDom1.pri

    Range
    13394958..13420076 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007502591.3 → XP_007502653.1  nuclear pore complex protein Nup50 isoform X1

    UniProtKB/TrEMBL
    F6SHF0
    Related
    ENSMODP00000065178.1, ENSMODT00000143754.1
    Conserved Domains (2) summary
    cd13170
    Location:369 → 485
    RanBD_NUP50; Nucleoporin 50 Ran-binding domain
    pfam08911
    Location:17 → 76
    NUP50; NUP50 (Nucleoporin 50 kDa)

  2. XM_001363947.4 → XP_001363984.1  nuclear pore complex protein Nup50 isoform X2

    UniProtKB/TrEMBL
    A0A5F8G4P9
    Related
    ENSMODP00000064511.1, ENSMODT00000124769.1
    Conserved Domains (2) summary
    cd13170
    Location:355 → 471
    RanBD_NUP50; Nucleoporin 50 Ran-binding domain
    pfam08911
    Location:3 → 62
    NUP50; NUP50 (Nucleoporin 50 kDa)
Nucleotide Protein
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