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HOXA1 homeobox A1 [ Monodelphis domestica (gray short-tailed opossum) ]

Gene ID: 100010240, updated on 8-May-2024

Summary

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Gene symbol
HOXA1
Gene description
homeobox A1
See related
EnsemblRapid:ENSMODG00000064560
Gene type
protein coding
RefSeq status
MODEL
Organism
Monodelphis domestica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
Orthologs
human mouse all
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Genomic context

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See HOXA1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 5 NC_077231.1 (310220745..310227340)
103 previous assembly MonDom5 (GCF_000002295.2) 8 NC_008808.1 (297424681..297430751)

Chromosome 5 - NC_077231.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107650212 Neighboring gene homeobox A3 Neighboring gene homeobox A2 Neighboring gene src kinase associated phosphoprotein 2 Neighboring gene uncharacterized LOC103106531

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Hox-A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMonDom1.pri

Genomic

  1. NC_077231.1 Reference mMonDom1.pri

    Range
    310220745..310227340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001363043.4 → XP_001363080.1  homeobox protein Hox-A1

    UniProtKB/TrEMBL
    F6Y630
    Related
    ENSMODP00000075343.1, ENSMODT00000093014.1
    Conserved Domains (2) summary
    COG5576
    Location:177 → 312
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:234 → 286
    Homeobox; Homeobox domain
Nucleotide Protein
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