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zgc:172128 zgc:172128 [ Danio rerio (zebrafish) ]

Gene ID: 100002012, updated on 27-Mar-2024

Summary

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Official Symbol
zgc:172128provided by ZNC
Official Full Name
zgc:172128provided by ZNC
Primary source
ZFIN:ZDB-GENE-080220-2
See related
Ensembl:ENSDARG00000101883 Ensembl:ENSDARG00000104208 AllianceGenome:ZFIN:ZDB-GENE-080220-2
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See zgc:172128 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (76426461..76430598)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (74845398..74849531)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene si:ch73-158p21.7 Neighboring gene zgc:113209 Neighboring gene si:ch1073-398c20.3 Neighboring gene NACHT, LRR and PYD domains-containing protein 12-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC100002012; zinc finger protein 45-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001114473.1 → NP_001107945.1  uncharacterized protein LOC100002012

    See identical proteins and their annotated locations for NP_001107945.1

    Status: VALIDATED

    Source sequence(s)
    BC155610
    UniProtKB/TrEMBL
    A9JRC8
    Related
    ENSDARP00000140749.1, ENSDART00000159789.3
    Conserved Domains (4) summary
    COG5048
    Location:63 → 435
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:221 → 241
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:261 → 286
    zf-H2C2_2; Zinc-finger double domain
    pfam14776
    Location:136 → 246
    UNC-79; Cation-channel complex subunit UNC-79

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    76426461..76430598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005168116.4 → XP_005168173.1  zinc finger protein 45-like isoform X1

    UniProtKB/TrEMBL
    A0A0R4ITU4, A0A8M2BFI8
    Related
    ENSDARP00000147653.1, ENSDART00000180424.1
    Conserved Domains (5) summary
    COG5048
    Location:133 → 294
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:221 → 241
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:401 → 426
    zf-H2C2_2; Zinc-finger double domain
    pfam14776
    Location:136 → 246
    UNC-79; Cation-channel complex subunit UNC-79
    pfam15909
    Location:364 → 438
    zf-C2H2_8; C2H2-type zinc ribbon
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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