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slc22a7b.3 solute carrier family 22 member 7b, tandem duplicate 3 [ Danio rerio (zebrafish) ]

Gene ID: 100001772, updated on 27-Mar-2024

Summary

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Official Symbol
slc22a7b.3provided by ZNC
Official Full Name
solute carrier family 22 member 7b, tandem duplicate 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-131120-103
See related
Ensembl:ENSDARG00000062182 AllianceGenome:ZFIN:ZDB-GENE-131120-103
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
oat2d; zfOat2; slc22a7l; si:ch211-183f23.2
Summary
Predicted to enable transmembrane transporter activity. Acts upstream of or within anion transmembrane transport. Located in plasma membrane. Is expressed in several structures, including eye; heart; liver; pleuroperitoneal region; and skeletal muscle. Orthologous to human SLC22A7 (solute carrier family 22 member 7). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 17
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (21982059..21993853, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (21962547..21973852, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1a Neighboring gene HtrA serine peptidase 1a Neighboring gene cysteine-rich protein 3 Neighboring gene solute carrier family 22 member 7b, tandem duplicate 2 Neighboring gene solute carrier family 22 member 7b, tandem duplicate 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The flounder organic anion transporter fOat has sequence, function, and substrate specificity similarity to both mammalian Oat1 and Oat3. Aslamkhan AG, et al. Am J Physiol Regul Integr Comp Physiol, 2006 Dec. PMID 16857889, Free PMC Article
  2. In vitro characterization of zebrafish (Danio rerio) organic anion transporters Oat2a-e. Dragojević J, et al. Toxicol In Vitro, 2018 Feb. PMID 29030288
  3. Phylogenetic, syntenic, and tissue expression analysis of slc22 genes in zebrafish (Danio rerio). Mihaljevic I, et al. BMC Genomics, 2016 Aug 12. PMID 27519738, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within monoatomic anion transmembrane transport IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
solute carrier family 22 member 7
Names
solute carrier family 22 (organic anion transporter), member 7, like
solute carrier family 22 (organic anion transporter), member 7b, tandem duplicate 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    21982059..21993853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001337228.7 → XP_001337264.3  solute carrier family 22 member 7 isoform X1

    UniProtKB/TrEMBL
    A0A8M1PZ35, F1QS93
    Related
    ENSDARP00000073332.4, ENSDART00000078873.5
    Conserved Domains (2) summary
    cd06174
    Location:141 → 506
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    TIGR00898
    Location:12 → 516
    2A0119; cation transport protein

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394986.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    234306..243571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473120.1 → XP_021328795.1  solute carrier family 22 member 7 isoform X2

    UniProtKB/TrEMBL
    A0A8M9Q6G5
    Conserved Domains (1) summary
    cl26863
    Location:12 → 516
    Sugar_tr; Sugar (and other) transporter
Nucleotide Protein
Heading Accession and Version

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