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NM_000175.5(GPI):c.1615G>A (p.Asp539Asn) AND Hemolytic anemia due to glucophosphate isomerase deficiency

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Sep 15, 1996
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000014612.26

Allele description [Variation Report for NM_000175.5(GPI):c.1615G>A (p.Asp539Asn)]

NM_000175.5(GPI):c.1615G>A (p.Asp539Asn)

Gene:
GPI:glucose-6-phosphate isomerase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.11
Genomic location:
Preferred name:
NM_000175.5(GPI):c.1615G>A (p.Asp539Asn)
HGVS:
  • NC_000019.10:g.34399974G>A
  • NG_012838.3:g.45383G>A
  • NM_000175.5:c.1615G>AMANE SELECT
  • NM_001184722.1:c.1648G>A
  • NM_001289789.1:c.1732G>A
  • NM_001289790.3:c.1531G>A
  • NM_001329909.1:c.1615G>A
  • NM_001329910.1:c.1615G>A
  • NM_001329911.2:c.1588G>A
  • NP_000166.2:p.Asp539Asn
  • NP_001171651.1:p.Asp550Asn
  • NP_001276718.1:p.Asp578Asn
  • NP_001276719.1:p.Asp511Asn
  • NP_001316838.1:p.Asp539Asn
  • NP_001316839.1:p.Asp539Asn
  • NP_001316840.1:p.Asp530Asn
  • LRG_1178t1:c.1615G>A
  • LRG_1178:g.45383G>A
  • LRG_1178p1:p.Asp539Asn
  • NC_000019.9:g.34890879G>A
  • P06744:p.Asp539Asn
Protein change:
D511N; ASP539ASN
Links:
UniProtKB: P06744#VAR_002538; OMIM: 172400.0004; OMIM: 172400.0011; dbSNP: rs137853585
NCBI 1000 Genomes Browser:
rs137853585
Molecular consequence:
  • NM_000175.5:c.1615G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001184722.1:c.1648G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001289789.1:c.1732G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001289790.3:c.1531G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001329909.1:c.1615G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001329910.1:c.1615G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001329911.2:c.1588G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hemolytic anemia due to glucophosphate isomerase deficiency
Synonyms:
Hemolytic anemia, nonspherocytic, due to glucose phosphate isomerase deficiency
Identifiers:
MONDO: MONDO:0013275; MedGen: C3150730; Orphanet: 712; OMIM: 613470

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000034867OMIM
no assertion criteria provided
Pathogenic
(Sep 15, 1996)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Molecular analysis of glucose phosphate isomerase deficiency associated with hereditary hemolytic anemia.

Kanno H, Fujii H, Hirono A, Ishida Y, Ohga S, Fukumoto Y, Matsuzawa K, Ogawa S, Miwa S.

Blood. 1996 Sep 15;88(6):2321-5.

PubMed [citation]
PMID:
8822954

Details of each submission

From OMIM, SCV000034867.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

Kanno et al. (1996) reported a case of GPI deficiency associated with hemolytic anemia (613470) in a 3-year-old girl who presented in an acute hemolytic crisis after a history of prolonged neonatal jaundice. Red blood cell GPI activity was decreased to 11.8% of normal. Homozygosity for an asp539-to-asn missense mutation (GPI Fukuoka) was found.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 14, 2024