U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

Pandanus fascicularis L. flower-specific cDNA library

Identifiers
BioSample: SAMN00167065; EST: LIBEST_024096
Organism
Pandanus odoratissimus
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; Pandanales; Pandanaceae; Pandanus
Attributes
strainWild
sexMale
tissueFlower
development stageFully matured
tissueFlower
vectorpDNR_LIB
re_1Sfi I A
re_2Sfi I B
Description

A fresh fully matured flower from a male Pandanus fascicularis plant was sampled and total RNA isolated by a Lithium chloride based cold extraction buffer procedure. Ist and IInd strand cDNA was synthesised according to the manufacturer's instructions (Creator SMART cDNA library construction kit, BD Biosciences). The cDNA was then size-fractionated and directionally cloned between the 5' Sfi IA and 3' Sfi IB sites of pDNR_LIB vector. Single-pass sequencing from the 5' end of the ESTs was performed using M13 forward primer in a automated sequencer (ABI 3130, Applied Biosystems). All the sequenced ESTs were screened for vector backbone contamination using the Vecscreen function. Their putative function was determined by performing the TBLASTX (nr/nt, nucleotide collection) and BLASTX algorithms using their default parameters.

Submission
M.S. Swaminathan Research Foundation, Ajay Parida; 2008-12-09
Accession:
SAMN00167065
ID:
167065

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center