Bacteria (ID 389557) - BioProject

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Accession: PRJNA389557 ID: 389557

Bacteria

GCID Multi-drug resistant Gram-negative clinical isolates from Thailand

This is the umbrella project for a new project to sequence up to 200 Gram-negative MDR clinical isolates from Thailand.

Accession	PRJNA389557
Data Type	Genome sequencing and assembly
Scope	Multispecies
Grants	"The J. Craig Venter Institute Genome Center For Infectious Diseases" (Grant ID U19AI110819, National Institute for Allergy and Infectious Diseases)
Submission	Registration date: 22-Jun-2017 JCVI
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	20210
WGS master	187
Genomic DNA	30
SRA Experiments	191
Protein Sequences	935918
Other datasets
BioSample	191
Assembly	190

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

3
187
190

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_002239885.1	NIUN00000000		SAMN07203008	ABCRPSTH02	Acinetobacter baumannii
GCA_002239865.1	NIUL00000000		SAMN07203010	ABCRPUTH03	Acinetobacter baumannii
GCA_002239735.1	NIUM00000000		SAMN07203009	ABCRPSTH01	Acinetobacter baumannii
GCA_002239725.1	NIUK00000000		SAMN07203011	ABCRPUTH02	Acinetobacter baumannii
GCA_002249525.1	NQFL00000000		SAMN07450714	ABCRPUTH15	Acinetobacter baumannii
GCA_002249505.1	NQFK00000000		SAMN07450715	ABCRPUTH14	Acinetobacter baumannii
GCA_002249465.1	NQFI00000000		SAMN07450717	ABCRPUTH12	Acinetobacter baumannii
GCA_002249475.1	NQFJ00000000		SAMN07450716	ABCRPUTH13	Acinetobacter baumannii
GCA_002249435.1	NQFG00000000		SAMN07450719	ABCRPUTH10	Acinetobacter baumannii
GCA_002249425.1	NQFE00000000		SAMN07450721	ABCRPUTH08	Acinetobacter baumannii
GCA_002249405.1	NQFF00000000		SAMN07450720	ABCRPUTH09	Acinetobacter baumannii
GCA_002249385.1	NQFD00000000		SAMN07450722	ABCRPUTH07	Acinetobacter baumannii
GCA_002249365.1	NQFB00000000		SAMN07450594	ABCRPUTH05	Acinetobacter baumannii
GCA_002249335.1	NQFA00000000		SAMN07450595	ABCRPUTH04	Acinetobacter baumannii
GCA_002249325.1	NQEZ00000000		SAMN07450596	ABCRPSTH12	Acinetobacter baumannii
GCA_002249305.1	NQEX00000000		SAMN07450598	ABCRPSTH10	Acinetobacter baumannii
GCA_002249265.1	NQET00000000		SAMN07450686	ABCRPSTH06	Acinetobacter baumannii
GCA_002249255.1	NQEW00000000		SAMN07450683	ABCRPSTH09	Acinetobacter baumannii
GCA_002249245.1	NQES00000000		SAMN07450687	ABCRPSTH05	Acinetobacter baumannii
GCA_002249225.1	NQEU00000000		SAMN07450685	ABCRPSTH07	Acinetobacter baumannii
GCA_002249605.1	NQFH00000000		SAMN07450718	ABCRPUTH11	Acinetobacter baumannii
GCA_002249585.1	NQEY00000000		SAMN07450597	ABCRPSTH11	Acinetobacter baumannii
GCA_002249545.1	NQEV00000000		SAMN07450684	ABCRPSTH08	Acinetobacter baumannii
GCA_002249655.1	NQFC00000000		SAMN07450593	ABCRPUTH06	Acinetobacter baumannii
GCA_002249185.1	NQER00000000		SAMN07450688	ABCRPSTH04	Acinetobacter baumannii
GCA_002249135.1	NQEQ00000000		SAMN07450689	ABCRPSTH03	Acinetobacter baumannii
GCA_002317045.1	NVQH00000000		SAMN07450651	ECFood+05	Aeromonas salmonicida
GCA_002246615.1	NPZP00000000		SAMN07450568	KPCRETH17	Enterobacter hormaechei subsp. steigerwaltii
GCA_002317955.1	NQBL00000000		SAMN07450643	ECLC+05	Escherichia coli
GCA_002290415.1	NIYQ00000000		SAMN07203027	ECCTRPUTH01	Escherichia coli
GCA_002246515.1	NQAJ00000000		SAMN07450578	ECCTRPRTH04	Escherichia coli
GCA_002247425.1	NQBA00000000		SAMN07450674	ECH+09	Escherichia coli
GCA_002248255.1	NQDM00000000		SAMN07450659	ECPUTH02	Escherichia coli
GCA_002248225.1	NQDK00000000		SAMN07450661	ECH+22	Escherichia coli
GCA_002248015.1	NQCS00000000		SAMN07450609	ECCTRSRTH10	Escherichia coli
GCA_002247945.1	NQCK00000000		SAMN07450678	ECH+05	Escherichia coli
GCA_002247815.1	NQBY00000000		SAMN07450630	ECSW+09	Escherichia coli
GCA_002247735.1	NQBU00000000		SAMN07450634	ECSW+05	Escherichia coli
GCA_002247725.1	NQBV00000000		SAMN07450633	ECSW+06	Escherichia coli
GCA_002247695.1	NQBT00000000		SAMN07450635	ECSW+04	Escherichia coli
GCA_002249645.1	NQFM00000000		SAMN07450713	ECCTRSRTH11	Escherichia coli
GCA_002249065.1	NQDT00000000		SAMN07450712	ECPUTH09	Escherichia coli
GCA_002248995.1	NQDN00000000		SAMN07450658	ECPUTH03	Escherichia coli
GCA_002248905.1	NQCM00000000		SAMN07450676	ECH+07	Escherichia coli
GCA_002248805.1	NQCJ00000000		SAMN07450679	ECH+04	Escherichia coli
GCA_002248785.1	NQCB00000000		SAMN07450627	ECSW+12	Escherichia coli
GCA_002248405.1	NQEA00000000		SAMN07450705	ECPSTH08	Escherichia coli
GCA_002248265.1	NQDO00000000		SAMN07450657	ECPUTH04	Escherichia coli
GCA_002246085.1	NPZH00000000		SAMN07450617	ECCTRSRTH02	Escherichia coli
GCA_002246755.1	NQAG00000000		SAMN07450765	ECCTRPRTH01	Escherichia coli
GCA_002239785.1	NIUI00000000		SAMN07203014	ECPUTH01	Escherichia coli
GCA_002239795.1	NIUH00000000		SAMN07203015	ECPSTH01	Escherichia coli
GCA_002246595.3		12	SAMN07450616	ECCTRSRTH03	Escherichia coli
GCA_002247995.2	NQCR00000000	2	SAMN07450610	ECCTRSRTH09	Escherichia coli
GCA_002251815.2	NQLI00000000	1	SAMN07450611	ECCTRSRTH08	Escherichia coli
GCA_002247905.2	NQCO00000000	1	SAMN07450614	ECCTRSRTH05	Escherichia coli
GCA_002246485.2	NQAI00000000	1	SAMN07450579	ECCTRPRTH03	Escherichia coli
GCA_002246495.2	NQAH00000000	1	SAMN07450580	ECCTRPRTH02	Escherichia coli
GCA_002246115.2	NPZJ00000000		SAMN07450615	ECCTRSRTH04	Escherichia coli
GCA_002247975.2	NQCQ00000000		SAMN07450612	ECCTRSRTH07	Escherichia coli
GCA_002247965.2	NQCP00000000		SAMN07450613	ECCTRSRTH06	Escherichia coli
GCA_002247775.2	NQBW00000000		SAMN07450632	ECSW+07	Escherichia coli
GCA_002247765.2	NQBX00000000		SAMN07450631	ECSW+08	Escherichia coli
GCA_002248045.2	NQCT00000000		SAMN07450607	KPCTRSRTH02	Klebsiella pneumoniae subsp. pneumoniae
GCA_002248955.2	NQDA00000000	1	SAMN07450600	KPCTRSRTH09	Klebsiella pneumoniae subsp. pneumoniae
GCA_002248105.2	NQCX00000000	2	SAMN07450603	KPCTRSRTH06	Klebsiella pneumoniae subsp. pneumoniae
GCA_002248115.3		11	SAMN07450602	KPCTRSRTH07	Klebsiella pneumoniae subsp. pneumoniae
GCA_002251875.3		7	SAMN07450608	KPCTRSRTH01	Klebsiella pneumoniae subsp. pneumoniae
GCA_002365935.1	NWTV00000000		SAMN07450647	KPFood+02	Klebsiella pneumoniae subsp. pneumoniae
GCA_002317885.1	NQDF00000000		SAMN07450646	KPLC+01	Klebsiella pneumoniae subsp. pneumoniae
GCA_002744555.1	NQDG00000000		SAMN07450645	KPLC+02	Klebsiella pneumoniae subsp. pneumoniae
GCA_002251895.1	NQLH00000000		SAMN07450554	KPCRETH31	Klebsiella pneumoniae subsp. pneumoniae
GCA_002248435.1	NQEC00000000		SAMN07450703	KPPUTH03	Klebsiella pneumoniae subsp. pneumoniae
GCA_002248425.1	NQEB00000000		SAMN07450704	KPPUTH02	Klebsiella pneumoniae subsp. pneumoniae
GCA_002248635.1	NQEM00000000		SAMN07450693	KPPSTH05	Klebsiella pneumoniae subsp. pneumoniae
GCA_002248625.1	NQAX00000000		SAMN07450576	KPCRETH13	Klebsiella pneumoniae subsp. pneumoniae
GCA_002248595.1	NQEL00000000		SAMN07450694	KPPSTH04	Klebsiella pneumoniae subsp. pneumoniae
GCA_002248585.1	NQEJ00000000		SAMN07450696	KPPSTH02	Klebsiella pneumoniae subsp. pneumoniae
GCA_002248545.1	NQEI00000000		SAMN07450697	KPPSTH01	Klebsiella pneumoniae subsp. pneumoniae
GCA_002248525.1	NQEG00000000		SAMN07450699	KPPUTH07	Klebsiella pneumoniae
GCA_002248505.1	NQEH00000000		SAMN07450698	KPPUTH08	Klebsiella pneumoniae subsp. pneumoniae
GCA_002248485.1	NQED00000000		SAMN07450702	KPPUTH04	Klebsiella pneumoniae subsp. pneumoniae
GCA_002248815.1	NQCH00000000		SAMN07450681	KPH+04	Klebsiella pneumoniae subsp. pneumoniae
GCA_002249125.1	NQEN00000000		SAMN07450692	KPPSTH06	Klebsiella pneumoniae subsp. pneumoniae
GCA_002249165.1	NQEE00000000		SAMN07450701	KPPUTH05	Klebsiella pneumoniae subsp. pneumoniae
GCA_002249535.1	NQEO00000000		SAMN07450691	KPPSTH07	Klebsiella pneumoniae subsp. pneumoniae
GCA_002249195.1	NQEP00000000		SAMN07450690	KPPSTH08	Klebsiella pneumoniae subsp. pneumoniae
GCA_002248845.1	NQCI00000000		SAMN07450680	KPH+05	Klebsiella pneumoniae subsp. pneumoniae
GCA_002248135.1	NQCZ00000000		SAMN07450601	KPCTRSRTH08	Klebsiella pneumoniae
GCA_002247885.1	NQCF00000000		SAMN07450623	KPH+02	Klebsiella pneumoniae subsp. pneumoniae
GCA_002247895.1	NQCG00000000		SAMN07450682	KPH+03	Klebsiella pneumoniae subsp. pneumoniae
GCA_002247865.1	NQCE00000000		SAMN07450624	KPH+01	Klebsiella pneumoniae subsp. pneumoniae
GCA_002247385.1	NQAZ00000000		SAMN07450574	KPCRETH15	Klebsiella pneumoniae subsp. pneumoniae
GCA_002247375.1	NQAW00000000		SAMN07450583	KPCRETH12	Klebsiella pneumoniae subsp. pneumoniae
GCA_002247365.1	NQAV00000000		SAMN07450584	KPCRETH11	Klebsiella pneumoniae subsp. pneumoniae
GCA_002247665.1	NQBQ00000000		SAMN07450638	KPSW+03	Klebsiella pneumoniae subsp. pneumoniae
GCA_002247645.1	NQBP00000000		SAMN07450639	KPSW+02	Klebsiella pneumoniae subsp. pneumoniae
GCA_002247625.1	NQBO00000000		SAMN07450640	KPSW+01	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246475.1	NQAF00000000		SAMN07450581	ECCRETH07	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246455.1	NQAE00000000		SAMN07450552	KPCRETH33	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246435.1	NQAD00000000		SAMN07450553	KPCRETH32	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246415.1	NQAB00000000		SAMN07450556	KPCRETH29	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246395.1	NQAC00000000		SAMN07450555	KPCRETH30	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246355.1	NPZZ00000000		SAMN07450558	KPCRETH27	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246365.1	NQAA00000000		SAMN07450557	KPCRETH28	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246325.1	NPZW00000000		SAMN07450561	KPCRETH24	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246315.1	NPZX00000000		SAMN07450560	KPCRETH25	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246285.1	NPZV00000000		SAMN07450562	KPCRETH23	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246275.1	NPZU00000000		SAMN07450563	KPCRETH22	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246245.1	NPZQ00000000		SAMN07450567	KPCRETH18	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246235.1	NPZS00000000		SAMN07450565	KPCRETH20	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246895.1	NQAN00000000		SAMN07450551	KPCRETH05	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246875.1	NQAK00000000		SAMN07450577	KPCTRPRTH01	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246845.1	NQAY00000000		SAMN07450575	KPCRETH14	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246835.1	NQAU00000000		SAMN07450586	KPCRETH10	Klebsiella pneumoniae subsp. pneumoniae
GCA_002239815.1	NIUF00000000		SAMN07203030	KPCRETH03	Klebsiella pneumoniae subsp. pneumoniae
GCA_002239805.1	NIUG00000000		SAMN07203029	KPCRETH04	Klebsiella pneumoniae subsp. pneumoniae
GCA_002239875.1	NIUJ00000000		SAMN07203013	KPPUTH01	Klebsiella pneumoniae
GCA_002239715.1	NIUD00000000		SAMN07203007	KPCRETH01	Klebsiella pneumoniae subsp. pneumoniae
GCA_002239705.1	NIUE00000000		SAMN07203032	KPCRETH02	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246155.1	NPZL00000000		SAMN07450572	ECCRETH03	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246125.1	NPZK00000000		SAMN07450573	KPCRETH16	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246705.1	NQAS00000000		SAMN07450588	KPCRETH08	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246695.1	NQAR00000000		SAMN07450589	KPCRETH07	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246685.1	NPZY00000000		SAMN07450559	KPCRETH26	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246765.1	NQAM00000000		SAMN07450621	KPCTRPRTH03	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246785.1	NQAP00000000		SAMN07450592	ECCRETH01	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246075.1	NPZG00000000		SAMN07450618	ECCTRSRTH01	Klebsiella pneumoniae
GCA_002246045.1	NPZF00000000		SAMN07450619	KPCTRPRTH05	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246035.1	NPZE00000000		SAMN07450620	KPCTRPRTH04	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246575.1	NQAT00000000		SAMN07450587	KPCRETH09	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246555.1	NQAL00000000		SAMN07450622	KPCTRPRTH02	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246655.1	NPZT00000000		SAMN07450564	KPCRETH21	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246635.1	NPZR00000000		SAMN07450566	KPCRETH19	Klebsiella pneumoniae subsp. pneumoniae
GCA_002246675.1	NQAO00000000		SAMN07450550	KPCRETH06	Klebsiella quasipneumoniae subsp. similipneumoniae
GCA_002248565.1	NQEK00000000		SAMN07450695	KPPSTH03	Klebsiella quasipneumoniae subsp. similipneumoniae
GCA_002248945.2	NQCW00000000	1	SAMN07450604	KPCTRSRTH05	Klebsiella quasipneumoniae subsp. similipneumoniae
GCA_002248085.2	NQCV00000000	1	SAMN07450605	KPCTRSRTH04	Klebsiella quasipneumoniae subsp. similipneumoniae
GCA_002248055.2	NQCU00000000		SAMN07450606	KPCTRSRTH03	Klebsiella quasipneumoniae subsp. similipneumoniae
GCA_002317935.1	NQDC00000000		SAMN07450652	ECFood+03	Shigella boydii
GCA_002205865.1	NISW00000000		SAMN07203017	ECSw+02	Shigella boydii
GCA_002247435.1	NQBB00000000		SAMN07450673	ECH+10	Shigella boydii
GCA_002247825.1	NQCA00000000		SAMN07450628	ECSW+11	Shigella boydii
GCA_002248245.1	NQDL00000000		SAMN07450660	ECH+23	Shigella boydii
GCA_002249045.1	NQDX00000000		SAMN07450708	ECPSTH05	Shigella boydii
GCA_002248875.1	NQCL00000000		SAMN07450677	ECH+06	Shigella boydii
GCA_002290435.1	NIYT00000000		SAMN07203023	ECH+01	Shigella boydii
GCA_002290405.1	NIYW00000000		SAMN07203019	ECSw+01	Shigella boydii
GCA_002290485.1	NIYS00000000		SAMN07203024	ECENV+01	Shigella boydii
GCA_002290495.1	NIYV00000000		SAMN07203020	ECH+03	Shigella flexneri
GCA_002290505.1	NIYU00000000		SAMN07203021	ECH+02	Shigella flexneri
GCA_002290425.1	NIYR00000000		SAMN07203026	ECFood+01	Shigella flexneri
GCA_002248855.1	NQCN00000000		SAMN07450675	ECH+08	Shigella sonnei
GCA_002248755.1	NQCD00000000		SAMN07450625	ECSW+14	Shigella sonnei
GCA_002248745.1	NQBZ00000000		SAMN07450629	ECSW+10	Shigella sonnei
GCA_002248715.1	NQBR00000000		SAMN07450637	ECSW+01	Shigella sonnei
GCA_002248705.1	NQBJ00000000		SAMN07450665	ECH+18	Shigella sonnei
GCA_002248685.1	NQBE00000000		SAMN07450670	ECH+13	Shigella sonnei
GCA_002248665.1	NQBF00000000		SAMN07450669	ECH+14	Shigella sonnei
GCA_002249025.1	NQDR00000000		SAMN07450654	ECPUTH07	Shigella sonnei
GCA_002248985.1	NQDQ00000000		SAMN07450655	ECPUTH06	Shigella sonnei
GCA_002248925.1	NQDB00000000		SAMN07450599	ECFood+02	Shigella sonnei
GCA_002249085.1	NQDV00000000		SAMN07450710	ECPSTH03	Shigella sonnei
GCA_002249075.1	NQDY00000000		SAMN07450707	ECPSTH06	Shigella sonnei
GCA_002248385.1	NQDZ00000000		SAMN07450706	ECPSTH07	Shigella sonnei
GCA_002248355.1	NQDW00000000		SAMN07450709	ECPSTH04	Shigella sonnei
GCA_002248345.1	NQDU00000000		SAMN07450711	ECPSTH02	Shigella sonnei
GCA_002248325.1	NQDS00000000		SAMN07450653	ECPUTH08	Shigella sonnei
GCA_002248305.1	NQDP00000000		SAMN07450656	ECPUTH05	Shigella sonnei
GCA_002248465.1	NQEF00000000		SAMN07450700	KPPUTH06	Shigella sonnei
GCA_002248195.1	NQDJ00000000		SAMN07450662	ECH+21	Shigella sonnei
GCA_002248175.1	NQDI00000000		SAMN07450663	ECH+20	Shigella sonnei
GCA_002248165.1	NQDH00000000		SAMN07450664	ECH+19	Shigella sonnei
GCA_002247805.1	NQCC00000000		SAMN07450626	ECSW+13	Shigella sonnei
GCA_002247685.1	NQBS00000000		SAMN07450636	ECSW+02	Shigella sonnei
GCA_002247605.1	NQBN00000000		SAMN07450641	ECLC+07	Shigella sonnei
GCA_002247575.1	NQBM00000000		SAMN07450642	ECLC+06	Shigella sonnei
GCA_002247555.1	NQBH00000000		SAMN07450667	ECH+16	Shigella sonnei
GCA_002247525.1	NQBG00000000		SAMN07450668	ECH+15	Shigella sonnei
GCA_002247505.1	NQBI00000000		SAMN07450666	ECH+17	Shigella sonnei
GCA_002247485.1	NQBD00000000		SAMN07450671	ECH+12	Shigella sonnei
GCA_002247465.1	NQBC00000000		SAMN07450672	ECH+11	Shigella sonnei
GCA_002246815.1	NQAQ00000000		SAMN07450591	ECCRETH02	Shigella sonnei
GCA_002246205.1	NPZO00000000		SAMN07450569	ECCRETH06	Shigella sonnei
GCA_002246195.1	NPZN00000000		SAMN07450570	ECCRETH05	Shigella sonnei
GCA_002246165.1	NPZM00000000		SAMN07450571	ECCRETH04	Shigella sonnei
GCA_002317945.1	NQBK00000000		SAMN07450644	ECLC+04	Shigella sonnei
GCA_002317915.1	NQDE00000000		SAMN07450648	ECFood+09	Shigella sonnei
GCA_002317875.1	NQDD00000000		SAMN07450649	ECFood+08	Shigella sonnei
GCA_002317065.1	NVQG00000000		SAMN07450650	ECFood+06	Shigella sonnei

SRA Data Details

Parameter	Value
Data volume, Gbases	143
Data volume, Mbytes	63939

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GCID Multi-drug resistant Gram-negative clinical isolates from Thailand

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