Campylobacter (ID 312235) - BioProject

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Accession: PRJNA312235 ID: 312235

Campylobacter

Biogeography in the genomes of transatlantic Campylobacter populations

Investigation into biogeographical signals in two populations of Campylobacter genomes to determine the extent of geographic clustering.

Accession	PRJNA312235
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Campylobacter[Taxonomy ID: 194] Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter
Publications	Pascoe B et al., "Local genes for local bacteria: Evidence of allopatry in the genomes of transatlantic Campylobacter populations.", Mol Ecol, 2017 Sep;26(17):4497-4508
Submission	Registration date: 5-Jun-2017 Swansea University
Related Resources	Medical Microbiology & Infectious Diseases, Swansea Health Canada - Campylobacter Lab USDA - Produce Safety and Microbiology Research MRC CLIMB Sheppard Lab
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	33878
WGS master	119
SRA Experiments	10
Publications
PubMed	1
PMC	1
Other datasets
BioSample	136
Assembly	119

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

11
108
119

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_002178515.1	NFPJ00000000	SAMN06888286	isolate_H13	Campylobacter coli
GCA_002178865.1	NFQI00000000	SAMN06888261	isolate_4	Campylobacter coli
GCA_002178875.1	NFQJ00000000	SAMN06888260	isolate_3	Campylobacter coli
GCA_002178855.1	NFQH00000000	SAMN06888262	isolate_5	Campylobacter coli
GCA_002178715.1	NFPY00000000	SAMN06888271	isolate_C15	Campylobacter coli
GCA_002178015.1	NFOA00000000	SAMN06888321	isolate_U2	Campylobacter coli
GCA_002168235.1	NHQU00000000	SAMN07158751	H14	Campylobacter jejuni
GCA_002177985.1	NFNX00000000	SAMN06888324	isolate_W10	Campylobacter jejuni
GCA_002177955.1	NFNU00000000	SAMN06888327	isolate_W13	Campylobacter jejuni
GCA_002177965.1	NFNW00000000	SAMN06888325	isolate_W11	Campylobacter jejuni
GCA_002177935.1	NFNT00000000	SAMN06888328	isolate_W14	Campylobacter jejuni
GCA_002177905.1	NFNS00000000	SAMN06888329	isolate_W15	Campylobacter jejuni
GCA_002177885.1	NFNR00000000	SAMN06888330	isolate_W16	Campylobacter jejuni
GCA_002177855.1	NFNO00000000	SAMN06888333	isolate_W19	Campylobacter jejuni
GCA_002177865.1	NFNP00000000	SAMN06888332	isolate_W18	Campylobacter jejuni
GCA_002177835.1	NFNN00000000	SAMN06888334	isolate_W2	Campylobacter jejuni
GCA_002177765.1	NFNL00000000	SAMN06888336	isolate_W21	Campylobacter jejuni
GCA_002177805.1	NFNM00000000	SAMN06888335	isolate_W20	Campylobacter jejuni
GCA_002177745.1	NFNJ00000000	SAMN06888338	isolate_W24	Campylobacter jejuni
GCA_002177775.1	NFNK00000000	SAMN06888337	isolate_W22	Campylobacter jejuni
GCA_002177735.1	NFNI00000000	SAMN06888339	isolate_W25	Campylobacter jejuni
GCA_002177695.1	NFNH00000000	SAMN06888340	isolate_W27	Campylobacter jejuni
GCA_002177685.1	NFNG00000000	SAMN06888341	isolate_W28	Campylobacter jejuni
GCA_002177675.1	NFNE00000000	SAMN06888343	isolate_W3	Campylobacter jejuni
GCA_002177655.1	NFND00000000	SAMN06888344	isolate_W30	Campylobacter jejuni
GCA_002177625.1	NFNC00000000	SAMN06888345	isolate_W31	Campylobacter jejuni
GCA_002177615.1	NFNB00000000	SAMN06888346	isolate_W32	Campylobacter jejuni
GCA_002177595.1	NFNA00000000	SAMN06888347	isolate_W33	Campylobacter jejuni
GCA_002177545.1	NFMV00000000	SAMN06888352	isolate_W38	Campylobacter jejuni
GCA_002177555.1	NFMX00000000	SAMN06888350	isolate_W36	Campylobacter jejuni
GCA_002177535.1	NFMT00000000	SAMN06888354	isolate_W40	Campylobacter jejuni
GCA_002177515.1	NFMS00000000	SAMN06888355	isolate_W41	Campylobacter jejuni
GCA_002177465.1	NFMQ00000000	SAMN06888357	isolate_W43	Campylobacter jejuni
GCA_002177455.1	NFMP00000000	SAMN06888358	isolate_W44	Campylobacter jejuni
GCA_002177475.1	NFMR00000000	SAMN06888356	isolate_W42	Campylobacter jejuni
GCA_002177305.1	NFQU00000000	SAMN06888366	RM3414	Campylobacter jejuni
GCA_002177435.1	NFMO00000000	SAMN06888359	isolate_W45	Campylobacter jejuni
GCA_002177365.1	NFML00000000	SAMN06888362	isolate_W6	Campylobacter jejuni
GCA_002177385.1	NFMN00000000	SAMN06888360	isolate_W46	Campylobacter jejuni
GCA_002177375.1	NFMM00000000	SAMN06888361	isolate_W5	Campylobacter jejuni
GCA_002177275.1	NFQM00000000	SAMN06888374	RM1170	Campylobacter jejuni
GCA_002177345.1	NFMK00000000	SAMN06888363	isolate_W7	Campylobacter jejuni
GCA_002177225.1	NFQS00000000	SAMN06888368	RM3412	Campylobacter jejuni
GCA_002177315.1	NFMI00000000	SAMN06888365	isolate_W9	Campylobacter jejuni
GCA_002177205.1	NFQO00000000	SAMN06888372	RM3413	Campylobacter jejuni
GCA_002177255.1	NFMH00000000	SAMN06888375	RM10985	Campylobacter jejuni
GCA_002177215.1	NFQP00000000	SAMN06888371	RM3411	Campylobacter jejuni
GCA_002177195.1	NFQR00000000	SAMN06888369	RM3417	Campylobacter jejuni
GCA_002178675.1	NFPU00000000	SAMN06888275	isolate_C4	Campylobacter jejuni
GCA_002178655.1	NFPT00000000	SAMN06888276	isolate_C5	Campylobacter jejuni
GCA_002178665.1	NFPX00000000	SAMN06888272	isolate_C16	Campylobacter jejuni
GCA_002178635.1	NFPS00000000	SAMN06888277	isolate_C6	Campylobacter jejuni
GCA_002178585.1	NFPN00000000	SAMN06888282	isolate_H1	Campylobacter jejuni
GCA_002178595.1	NFPP00000000	SAMN06888280	isolate_C9	Campylobacter jejuni
GCA_002178575.1	NFPO00000000	SAMN06888281	isolate_D1	Campylobacter jejuni
GCA_002178545.1	NFPM00000000	SAMN06888283	isolate_H10	Campylobacter jejuni
GCA_002178505.1	NFPL00000000	SAMN06888284	isolate_H11	Campylobacter jejuni
GCA_002178815.1	NFQG00000000	SAMN06888263	isolate_A1	Campylobacter jejuni
GCA_002178795.1	NFQD00000000	SAMN06888266	isolate_B4	Campylobacter jejuni
GCA_002178805.1	NFQF00000000	SAMN06888264	isolate_B2	Campylobacter jejuni
GCA_002178775.1	NFQC00000000	SAMN06888267	isolate_C1	Campylobacter jejuni
GCA_002178735.1	NFQA00000000	SAMN06888269	isolate_C12	Campylobacter jejuni
GCA_002178725.1	NFQB00000000	SAMN06888268	isolate_C10	Campylobacter jejuni
GCA_002179475.1	NFQE00000000	SAMN06888265	isolate_B3	Campylobacter jejuni
GCA_002179485.1	NFQL00000000	SAMN06888258	isolate_1	Campylobacter jejuni
GCA_002179455.1	NFPZ00000000	SAMN06888270	isolate_C13	Campylobacter jejuni
GCA_002179415.1	NFPW00000000	SAMN06888273	isolate_C2	Campylobacter jejuni
GCA_002179425.1	NFPV00000000	SAMN06888274	isolate_C3	Campylobacter jejuni
GCA_002179395.1	NFPR00000000	SAMN06888278	isolate_C7	Campylobacter jejuni
GCA_002179375.1	NFPK00000000	SAMN06888285	isolate_H12	Campylobacter jejuni
GCA_002179335.1	NFPA00000000	SAMN06888295	isolate_H23	Campylobacter jejuni
GCA_002179345.1	NFPQ00000000	SAMN06888279	isolate_C8	Campylobacter jejuni
GCA_002179315.1	NFPE00000000	SAMN06888291	isolate_H19	Campylobacter jejuni
GCA_002179285.1	NFOP00000000	SAMN06888306	isolate_H33	Campylobacter jejuni
GCA_002179265.1	NFOM00000000	SAMN06888309	isolate_H4	Campylobacter jejuni
GCA_002179245.1	NFOQ00000000	SAMN06888305	isolate_H32	Campylobacter jejuni
GCA_002179235.1	NFOI00000000	SAMN06888313	isolate_H9	Campylobacter jejuni
GCA_002178965.1	NFMJ00000000	SAMN06888364	isolate_W8	Campylobacter jejuni
GCA_002179215.1	NFOG00000000	SAMN06888315	isolate_S2	Campylobacter jejuni
GCA_002179195.1	NFOB00000000	SAMN06888320	isolate_U1	Campylobacter jejuni
GCA_002179165.1	NFNY00000000	SAMN06888323	isolate_W1	Campylobacter jejuni
GCA_002179155.1	NFNZ00000000	SAMN06888322	isolate_U3	Campylobacter jejuni
GCA_002179125.1	NFNV00000000	SAMN06888326	isolate_W12	Campylobacter jejuni
GCA_002179115.1	NFNQ00000000	SAMN06888331	isolate_W17	Campylobacter jejuni
GCA_002179085.1	NFNF00000000	SAMN06888342	isolate_W29	Campylobacter jejuni
GCA_002179075.1	NFMZ00000000	SAMN06888348	isolate_W34	Campylobacter jejuni
GCA_002179045.1	NFMY00000000	SAMN06888349	isolate_W35	Campylobacter jejuni
GCA_002179005.1	NFMU00000000	SAMN06888353	isolate_W4	Campylobacter jejuni
GCA_002179015.1	NFMW00000000	SAMN06888351	isolate_W37	Campylobacter jejuni
GCA_002178955.1	NFQT00000000	SAMN06888367	RM3407	Campylobacter jejuni
GCA_002178945.1	NFQQ00000000	SAMN06888370	RM1503	Campylobacter jejuni
GCA_002178935.1	NFQN00000000	SAMN06888373	RM3409	Campylobacter jejuni
GCA_002178915.1	NFQK00000000	SAMN06888259	isolate_2	Campylobacter jejuni
GCA_002178495.1	NFPI00000000	SAMN06888287	isolate_H15	Campylobacter jejuni
GCA_002178475.1	NFPH00000000	SAMN06888288	isolate_H16	Campylobacter jejuni
GCA_002178445.1	NFPG00000000	SAMN06888289	isolate_H17	Campylobacter jejuni
GCA_002178435.1	NFPF00000000	SAMN06888290	isolate_H18	Campylobacter jejuni
GCA_002178395.1	NFPC00000000	SAMN06888293	isolate_H21	Campylobacter jejuni
GCA_002178405.1	NFPD00000000	SAMN06888292	isolate_H2	Campylobacter jejuni
GCA_002178355.1	NFOZ00000000	SAMN06888296	isolate_H24	Campylobacter jejuni
GCA_002178165.1	NFON00000000	SAMN06888308	isolate_H35	Campylobacter jejuni
GCA_002178365.1	NFPB00000000	SAMN06888294	isolate_H22	Campylobacter jejuni
GCA_002178325.1	NFOY00000000	SAMN06888297	isolate_H25	Campylobacter jejuni
GCA_002178295.1	NFOX00000000	SAMN06888298	isolate_H26	Campylobacter jejuni
GCA_002178285.1	NFOW00000000	SAMN06888299	isolate_H27	Campylobacter jejuni
GCA_002178265.1	NFOV00000000	SAMN06888300	isolate_H28	Campylobacter jejuni
GCA_002178235.1	NFOU00000000	SAMN06888301	isolate_H29	Campylobacter jejuni
GCA_002178225.1	NFOT00000000	SAMN06888302	isolate_H3	Campylobacter jejuni
GCA_002178195.1	NFOS00000000	SAMN06888303	isolate_H30	Campylobacter jejuni
GCA_002178175.1	NFOR00000000	SAMN06888304	isolate_H31	Campylobacter jejuni
GCA_002178155.1	NFOO00000000	SAMN06888307	isolate_H34	Campylobacter jejuni
GCA_002178135.1	NFOK00000000	SAMN06888311	isolate_H7	Campylobacter jejuni
GCA_002178105.1	NFOJ00000000	SAMN06888312	isolate_H8	Campylobacter jejuni
GCA_002178085.1	NFOF00000000	SAMN06888316	isolate_S3	Campylobacter jejuni
GCA_002178075.1	NFOH00000000	SAMN06888314	isolate_S1	Campylobacter jejuni
GCA_002178055.1	NFOD00000000	SAMN06888318	isolate_S5	Campylobacter jejuni
GCA_002178035.1	NFOC00000000	SAMN06888319	isolate_S6	Campylobacter jejuni
GCA_002179635.1	NFOE00000000	SAMN06888317	isolate_S4	Campylobacter jejuni
GCA_002179615.1	NFOL00000000	SAMN06888310	isolate_H6	Campylobacter jejuni

SRA Data Details

Parameter	Value
Data volume, Gbases	2
Data volume, Mbytes	1417

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Campylobacter

Biogeography in the genomes of transatlantic Campylobacter populations

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