ID 646837 - BioProject

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Accession: PRJNA646837 ID: 646837

Whole genome sequencing of antimicrobial resistant organisms from an Australian ICU

Accession	PRJNA646837
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 17-Jul-2020 Monash University
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	677
WGS master	1
Genomic DNA	676
SRA Experiments	88
Protein Sequences	227959
Other datasets
BioSample	180
Assembly	137

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

136
1
137

Assembly	WGS	Chrs	BioSample	Infraspecies Id	Taxonomy
GCA_904865725.1		4	SAMEA3357501	MINF_4A	Burkholderia cepacia
GCA_904859905.1		3	SAMEA3357462	MSB1_1H	Citrobacter freundii
GCA_016126855.1		4	SAMN17054651	MSB1_8J	Enterobacter hormaechei
GCA_017584065.1		8	SAMN15566637	VRE3355	Enterococcus faecium
GCA_015476295.1		7	SAMN15566645	VRE3363	Enterococcus faecium
GCA_015999425.1		4	SAMN15566664	VRE3382	Enterococcus faecium
GCA_015999405.1		4	SAMN15566671	VRE3389	Enterococcus faecium
GCA_015325925.1		5	SAMN15566652	VRE3370	Enterococcus faecium
GCA_905071865.1		6	SAMEA3357393	MSB1_1D	Escherichia coli
GCA_905071835.1		12	SAMEA3357480	MSB1_4I	Escherichia coli
GCA_904866455.1		5	SAMEA3357417	MSB1_4E	Escherichia coli
GCA_904866495.1		5	SAMEA3357384	MSB1_6C	Escherichia coli
GCA_904863165.1		5	SAMEA3357379	MSB1_3C	Escherichia coli
GCA_904863255.1		9	SAMEA3357504	MINF_9A	Escherichia coli
GCA_904863235.1		7	SAMEA3357519	MINF_7C	Escherichia coli
GCA_904863105.1		4	SAMEA3357523	MINF_1D	Escherichia coli
GCA_904865655.1		6	SAMEA3357369	MSB1_8B	Escherichia coli
GCA_904864635.1		5	SAMEA3357497	MSB2_1A	Escherichia coli
GCA_904864555.1		5	SAMEA3357386	MSB1_7C	Escherichia coli
GCA_904863445.1		4	SAMEA3357407	MSB1_9D	Escherichia coli
GCA_904863385.1		3	SAMEA3357452	MSB1_1A	Escherichia coli
GCA_904863305.1		8	SAMEA3357475	MSB1_3B	Escherichia coli
GCA_904863375.1		8	SAMEA3357499	MINF_1A	Escherichia coli
GCA_904865835.1		4	SAMEA3357485	MSB1_9I	Escherichia coli
GCA_904866345.1		10	SAMEA3357527	MINF_8D	Escherichia coli
GCA_904866305.1		6	SAMEA3357530	MINF_2E	Escherichia coli
GCA_904864615.1		5	SAMEA3357463	MSB1_7A	Escherichia coli
GCA_904866385.1		4	SAMEA3357450	MSB1_4G	Escherichia coli
GCA_904866225.1		3	SAMEA3357457	MSB1_8G	Escherichia coli
GCA_904866245.1		7	SAMEA3357382	MSB1_5C	Escherichia coli
GCA_904863085.1		1	SAMEA3357515	MINF_10B	Klebsiella aerogenes
GCA_904863345.1		5	SAMEA3357409	MSB1_10D	Klebsiella oxytoca
GCA_026154285.1	JAPFLY000000000		SAMEA3357035	INF134	Klebsiella pneumoniae
GCA_026153135.1		4	SAMEA3357157	INF300	Klebsiella pneumoniae
GCA_026168415.1		3	SAMN06112218	INF061	Klebsiella pneumoniae
GCA_904863335.2		2	SAMN06112194	KSB1_5B	Klebsiella pneumoniae
GCA_026256285.1		5	SAMEA3357130	INF192	Klebsiella pneumoniae
GCA_026256445.1		2	SAMEA3357081	INF079	Klebsiella pneumoniae
GCA_026254345.1		2	SAMEA3357208	INF329	Klebsiella pneumoniae
GCA_026254425.1		6	SAMEA3357155	INF299	Klebsiella pneumoniae
GCA_026256265.1		2	SAMEA3357140	INF201	Klebsiella pneumoniae
GCA_026254445.1		6	SAMN06112224	INF298	Klebsiella pneumoniae
GCA_026256425.1		7	SAMEA3356970	INF102	Klebsiella pneumoniae
GCA_026256365.1		2	SAMEA3357086	INF161	Klebsiella pneumoniae
GCA_026256345.1		2	SAMEA3357107	INF174	Klebsiella pneumoniae
GCA_026256305.1		2	SAMEA3357126	INF188	Klebsiella pneumoniae
GCA_026256185.1		3	SAMN06112222	INF277	Klebsiella pneumoniae
GCA_026254465.1		9	SAMEA3357277	INF281	Klebsiella pneumoniae
GCA_026254405.1		3	SAMEA3357161	INF302	Klebsiella pneumoniae
GCA_026254365.1		3	SAMEA3357191	INF321	Klebsiella pneumoniae
GCA_026253925.1		3	SAMEA3357237	INF346	Klebsiella pneumoniae
GCA_026253465.1		4	SAMEA3357256	INF355	Klebsiella pneumoniae
GCA_026253445.1		2	SAMEA3357260	INF357	Klebsiella pneumoniae
GCA_026253405.1		3	SAMEA3357269	INF361	Klebsiella pneumoniae
GCA_026253385.1		3	SAMEA3357345	KSB1_6G	Klebsiella pneumoniae
GCA_026253345.1		3	SAMEA3357378	KSB1_9J	Klebsiella pneumoniae
GCA_026224565.1		2	SAMEA3357421	KSB2_1C	Klebsiella pneumoniae
GCA_026253365.1		3	SAMEA3357346	KSB1_7G	Klebsiella pneumoniae
GCA_026253425.1		3	SAMEA3357262	INF358	Klebsiella pneumoniae
GCA_026254005.1		3	SAMEA3357233	INF344	Klebsiella pneumoniae
GCA_026254325.1		3	SAMEA3357226	INF341	Klebsiella pneumoniae
GCA_026254385.1		5	SAMEA3357187	INF319	Klebsiella pneumoniae
GCA_026256205.1		2	SAMEA3357219	INF247	Klebsiella pneumoniae
GCA_026256225.1		3	SAMEA3357174	INF223	Klebsiella pneumoniae
GCA_026256245.1		3	SAMEA3357158	INF215	Klebsiella pneumoniae
GCA_026256325.1		3	SAMEA3357113	INF177	Klebsiella pneumoniae
GCA_026256385.1		2	SAMEA3357075	INF156	Klebsiella pneumoniae
GCA_026256405.1		2	SAMEA3357003	INF119	Klebsiella pneumoniae
GCA_026256465.1		1	SAMEA3356991	INF032	Klebsiella pneumoniae
GCA_020149895.1		7	SAMEA3357330	KSB1_9E	Klebsiella pneumoniae
GCA_020149875.1		9	SAMEA3357001	INF118	Klebsiella pneumoniae
GCA_020149825.1		6	SAMEA3357427	KSB2_6C	Klebsiella pneumoniae
GCA_020149785.1		6	SAMEA3356962	INF019	Klebsiella pneumoniae
GCA_904863355.1		3	SAMEA3357060	INF148	Klebsiella pneumoniae
GCA_904863325.1		5	SAMEA3357254	INF354	Klebsiella pneumoniae
GCA_904863285.1		4	SAMEA3357192	INF231	Klebsiella pneumoniae
GCA_904863435.1		8	SAMN07738870	KSB1_1B	Klebsiella pneumoniae
GCA_904863365.1		9	SAMEA3357023	INF049	Klebsiella pneumoniae
GCA_904863395.1		7	SAMEA3357225	INF250	Klebsiella pneumoniae
GCA_904863295.1		6	SAMEA3357408	KSB2_2B	Klebsiella pneumoniae
GCA_904864515.1		4	SAMEA3357423	KSB2_2C	Klebsiella pneumoniae
GCA_904864495.1		8	SAMEA3357147	INF208	Klebsiella pneumoniae
GCA_904864475.1		3	SAMEA3357096	INF168	Klebsiella pneumoniae
GCA_904864455.1		6	SAMEA3357235	INF345	Klebsiella pneumoniae
GCA_904864485.1		5	SAMEA3357418	KSB2_8B	Klebsiella pneumoniae
GCA_904864625.1		5	SAMEA3357101	INF171	Klebsiella pneumoniae
GCA_904863425.1		3	SAMEA3357241	INF348	Klebsiella pneumoniae
GCA_904863065.1		6	SAMEA3357388	KSB2_3A	Klebsiella pneumoniae
GCA_904863075.1		5	SAMEA3357214	INF334	Klebsiella pneumoniae
GCA_904859915.1		3	SAMEA3356951	INF007	Klebsiella pneumoniae
GCA_904863415.1		5	SAMEA3357320	KSB1_8D	Klebsiella pneumoniae
GCA_904863055.1		6	SAMEA3356968	INF022	Klebsiella pneumoniae
GCA_904863155.1		2	SAMEA3357041	INF058	Klebsiella pneumoniae
GCA_904863225.1		5	SAMN06112204	KSB1_6J	Klebsiella pneumoniae
GCA_904863205.1		2	SAMEA3356952	INF008	Klebsiella pneumoniae
GCA_904863195.1		9	SAMEA3357033	INF133	Klebsiella pneumoniae
GCA_904863145.1		4	SAMEA3357068	INF072	Klebsiella pneumoniae
GCA_904863135.1		8	SAMEA3357175	INF310	Klebsiella pneumoniae
GCA_904866235.1		3	SAMEA3357009	INF122	Klebsiella pneumoniae
GCA_904866205.1		4	SAMEA3357054	INF145	Klebsiella pneumoniae
GCA_904866185.1		2	SAMEA3357376	KSB1_8J	Klebsiella pneumoniae
GCA_904866195.1		5	SAMEA3357203	INF327	Klebsiella pneumoniae
GCA_904866215.1		3	SAMEA3357265	INF359	Klebsiella pneumoniae
GCA_904865805.1		2	SAMEA3357052	INF144	Klebsiella pneumoniae
GCA_904865795.1		6	SAMEA3357419	KSB2_10B	Klebsiella pneumoniae
GCA_904866375.1		3	SAMEA3357211	INF242	Klebsiella pneumoniae
GCA_904866405.1		7	SAMEA3357273	INF279	Klebsiella pneumoniae
GCA_904866425.1		4	SAMEA3357053	INF065	Klebsiella pneumoniae
GCA_904864605.1		4	SAMEA3357013	INF044	Klebsiella pneumoniae
GCA_904864595.1		4	SAMN06112228	INF333	Klebsiella pneumoniae
GCA_904864575.1		3	SAMEA3357296	-	Klebsiella pneumoniae
GCA_904864505.1		2	SAMEA3357212	INF331	Klebsiella pneumoniae
GCA_904864535.1		7	SAMEA3357177	INF313	Klebsiella pneumoniae
GCA_904864525.1		2	SAMEA3357245	INF350	Klebsiella pneumoniae
GCA_904865715.1		8	SAMEA3357352	KSB1_5H	Klebsiella pneumoniae
GCA_904865705.1		3	SAMEA3357339	KSB1_9F	Klebsiella pneumoniae
GCA_904865685.1		2	SAMEA3357121	INF182	Klebsiella pneumoniae
GCA_904866355.1		5	SAMN06112198	KSB1_6F	Klebsiella pneumoniae
GCA_904866265.1		8	SAMEA3357071	INF154	Klebsiella pneumoniae
GCA_904865665.1		5	SAMEA3357392	KSB2_5A	Klebsiella pneumoniae
GCA_904866335.1		3	SAMEA3357253	INF266	Klebsiella pneumoniae
GCA_904865825.1		7	SAMEA3356961	INF018	Klebsiella pneumoniae
GCA_904865785.1		7	SAMEA3357050	INF142	Klebsiella pneumoniae
GCA_904865775.1		8	SAMEA3357294	INF290	Klebsiella pneumoniae
GCA_904865765.1		5	SAMEA3357401	KSB2_9A	Klebsiella pneumoniae
GCA_904866505.1		5	SAMEA3357196	INF323	Klebsiella pneumoniae
GCA_904866485.1		4	SAMN06112200	KSB1_1H	Klebsiella pneumoniae
GCA_904866545.1		3	SAMEA3357194	INF232	Klebsiella pneumoniae
GCA_904866535.1		3	SAMEA3357311	KSB1_8C	Klebsiella pneumoniae
GCA_904866525.1		8	SAMEA3357218	INF336	Klebsiella pneumoniae
GCA_904866475.1		4	SAMN06112206	KSB2_9B	Klebsiella pneumoniae
GCA_904866515.1		4	SAMEA3357303	KSB1_10B	Klebsiella pneumoniae
GCA_904866445.1		8	SAMEA3357165	INF305	Klebsiella pneumoniae
GCA_020149805.1		6	SAMEA3357250	INF352	Klebsiella variicola
GCA_904866275.1		1	SAMEA3357502	MINF_7A	Pseudomonas aeruginosa
GCA_905071885.1		1	SAMEA3357500	MINF_3A	Pseudomonas aeruginosa
GCA_904866365.1		4	SAMEA3357389	MSB1_9C	Serratia marcescens

SRA Data Details

Parameter	Value
Data volume, Gbases	37
Data volume, Mbytes	28168

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Whole genome sequencing of antimicrobial resistant organisms from an Australian ICU

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