2F2H,1XSI,1XSI,1WE5


Conserved Protein Domain Family
GH31_xylosidase_YicI

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cd06593: GH31_xylosidase_YicI 
Click on image for an interactive view with Cn3D
alpha-xylosidase YicI-like
YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Statistics
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PSSM-Id: 269879
Aligned: 49 rows
Threshold Bit Score: 404.643
Created: 11-Sep-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:2F2H_A; Escherichia coli YicI xylosidase binds XTG (4-nitrophenyl-(6-S-alpha-D-xylopyranosyl)-beta-D-glucopyranoside); defined at 4A contacts.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                       #                                
2F2H_A       259 GRPALPPAWSFGLWLTTSFttnYDEATVNSFIDGMAERNLPLHVFHFDCFWmka-------fqwCDFEWDPlTFPDPEGM 331 Escherichia coli
ERH12331      20 GRPPRLPEWTFGVWWSRNSy--ESAAEVRAVADRLRASDTPGDLLHLDPGWmdl--------deLGLSWDDeAFPDPEGL 89  halophilic arch...
WP_004273387 251 GRAPVPPLWSLGVILSKAYy--RTPEEVIAVATEVRAKGMPCDTITFDGRAwqdt------dtrFAFEWDPkRFRDPAAT 322 Azospirillum am...
WP_008306296 250 GKAPTPPVWSLGVILSKAYy--KDVPELLTTAKDVRDHKMPCDVITLDGRAwqdt------dtrFAFEWDPkRFDDPAAV 321 Glaciecola agar...
YP_007173791 259 GGAPEVPRWSLGVWMSRAYy--RTAEEAMEIAQEIRKRQIPCDVFTLDGRAwlev------dtrCTLDFDTsRYPDPAAW 330 Deinococcus per...
WP_003749860 198 GHSEMIEPWTLGVWYSRCAy--MNKEELYGVKDKLRELELPFDVLNIDVHWgknywyekfwvdcCDFEWGEdKFPEPTKM 275 Listeria seeligeri
WP_009256265 268 GSIPMIPRWAFGLWMSKCVy--KDQEEVVQVVKRAKEEEIAIDVINLDAWQase--------dsGAWVWDRkRFPDPEGM 337 Lachnospiraceae...
YP_053558    276 GRITGVPDEAYGLWLNRLYy--HNKKELFTEIENSIKNEYPIDVFTLDPKWiknr-----ytksCNFEFNDdQFGDLETM 348 Mesoplasma flor...
EGQ43003     264 GRPETPPLWSFGFWSSRNTy--ESWEQVQEISEKYRSMNIPCDVIHLDPGWmg---------deLDMDWGE-SFQNPEDE 331 Candidatus Nano...
CDE67224     275 GQIPMIPKWAFGFWMSKCSy--MSRKEVEDVVADAEKFGIGIDVIHIDGWQrqd--------msGVWEWDTeRFPEPEEM 344 Blautia sp. CAG:37
Feature 1                     #                                                                  
2F2H_A       332 IRRLKAKGLKICVWINPYIGQKsp-vFKELQEKGYLLkrpdgslw-----------qwdkwqpgLAIYDFTNPDACKWYA 399 Escherichia coli
ERH12331      90 LADLAADGFHVSVWEYPYLKAGtr-pFATARDRGHLVedgagrplll--------rrpskadtrAGILDFTDPDAVAWWR 160 halophilic arch...
WP_004273387 323 LATLKAMDFKICAWEYPLVSVNnp-lFDELAAKGWLLkdrrtgeayryqwdlepfgpvltplpdSGLIDFTHPDAYAYWR 401 Azospirillum am...
WP_008306296 322 INKLKADNFKVCIWEYPLVSIQhp-lFKEMAKKGWLLkdkrtgeayqyqwdmsafaevltplpeSGIVDFTHPDAYQFWM 400 Glaciecola agar...
YP_007173791 331 IRELKSLHYKLCVWEYPLISIRne-hFADLAAKGYFLkdrqgdtyvyhwd-papfgslltplppSGLIDFTNPEARAWYK 408 Deinococcus per...
WP_003749860 276 FAEMMEQNVACSLWMNPYLPPGta-vYEEAVEKGYLVkttegglah----------ikrrqvseIGIPDLTNPEAYNWWK 344 Listeria seeligeri
WP_009256265 338 ITFLLENRIHLCLWIYPYIGEEse-yFRLAGEKGWLVkdgngnpltf--------yataaadrkVGCFDFTNPGFREWYV 408 Lachnospiraceae...
YP_053558    349 LSEVHEKGFKMCFWINPYLQIDnsemWNEVYEKGYHVkkadgsiahi-------wsgfgnyqetASAIDLTNPDAVVYWK 421 Mesoplasma flor...
EGQ43003     332 LKKLKTKNFEVCAWEYPYLPKGte-lFSDALARGFLVenkdgrpy------------ifedggkTGILDFSLEEASTWWK 398 Candidatus Nano...
CDE67224     345 IKELNKKNIHLSLWNYPYLQEDsp-aFKELAERGFFIknkeghpamf--------katadseflCACFDFTNPEFLAWYE 415 Blautia sp. CAG:37
Feature 1                      # ##                                                              
2F2H_A       400 DKLkgLVAMGVDCFKTDFGERIPTDvq-wfDGSDPQKMHNHYAYIYNELVWNVLKDTVGee------------------- 459 Escherichia coli
ERH12331     161 DRHrrLLDQGVDAFKTDFGEYLPPEav-taDGRTGRTTHNRYPLDYQRAVAGAFDGGANdggatddettdseaatdddpa 239 halophilic arch...
WP_004273387 402 DCHkpLFDAGVDMIKADFGEQVEPDml-asNGETGHALHNVYAHLYNRCVYEAAQTYCPs-------------------- 460 Azospirillum am...
WP_008306296 401 ESHkpLFDLGVDMIKADFGEQVEDDnmlahSGDSGDRLHNVYSFLYNKCVYEAAEKYSKn-------------------- 460 Glaciecola agar...
YP_007173791 409 ANHnkLFDIGVDVMKTDFAEQVPEDay-asNGDDGVRHHNAYGLLFNQTVYEATQERGPs-------------------- 467 Deinococcus per...
WP_003749860 345 EKVkdLLRLGIRVLKPDYTDRIPEDal-ffNGYTGKDMHNAYIYLYIKACYDATQEIHGt-------------------- 403 Listeria seeligeri
WP_009256265 409 PRVkeVIGMGIGAVKTDFSEAVPENav-yyDGSNGLQGHNKLTYLYAKTIYEAMKEVKEplg------------------ 469 Lachnospiraceae...
YP_053558    422 NKIkdLMYKGVDFIKTDYGDSVDEDav-mfNGEKGTNFKNAYAELYLRYVYEATQEVKGid------------------- 481 Mesoplasma flor...
EGQ43003     399 GKNkrIINSGIGAIKADFGEYLPKDsv-lsDETLGSSSRNKYPKMYRESIAEAFNEIGKd-------------------- 457 Candidatus Nano...
CDE67224     416 ERVkkIVRMGVSVIKIDFSEAVPEDvv-fyNGMSGREGHNLLTYLYAKNIYTWMKEICDerg------------------ 476 Blautia sp. CAG:37
Feature 1                #            #  #                                #                      
2F2H_A       460 --eAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFen--------taPAHVYKRWCA 529 Escherichia coli
ERH12331     240 ddtPILWSRSGWAGAQQYPVHWGGDAAATEAGFAATVRGGLSLAASGVPLWSCDIGGYkp--------epSPDLYRRWAQ 311 halophilic arch...
WP_004273387 461 --gPFLFSRASWIGAQRYPAQWGGDPQADWEGMAGNLRGGLSWGLSGAPYYATDVGGFyrd-------qrDPVLYVRWAQ 531 Azospirillum am...
WP_008306296 461 --gPFLFSRSAWTGSQRFPSQWGGDPQADWGGLSASIRGALSWGMSGAPYFATDVGGFfkd-------trDQELFIRWSQ 531 Glaciecola agar...
YP_007173791 468 --gGLVWGRAGWTGSQRYALGWGGDPQTDWGGLIGSLHGGLSWGLSGVPYHSHDIGGFygp-------kpDAELYVRWSQ 538 Deinococcus per...
WP_003749860 404 ---SLVWKRPGFLGTGKFAGTWSGDVESSFEGLKYTIRGGLSVGFTGEGYWSSDIAGFkge-------kpSPELYIRWSQ 473 Listeria seeligeri
WP_009256265 470 -erPMLWGRSGYAGSHTIPAAWAGDSSTHLNNHACILQGGLSIALSGVAYWGFDMGGFyntdhegyecvpEEEEYIRSTQ 548 Lachnospiraceae...
YP_053558    482 --kGFCLSRPGYIGTQKYVGKWAGDSASSFNELKMQLLSGLSNSLCGTVMWGTDIGGFldi------nanEEDLYARWSQ 553 Mesoplasma flor...
EGQ43003     458 ---AVLWSRSGWAKQLDGEIFWNGDSYSDWEGFETTIKSGLNSAMSGYLYWSSDSGGYes--------epSDKLYEEWMK 526 Candidatus Nano...
CDE67224     477 -elPMLWGRSGYVGSHTIPAAWAGDSSSDKASHSAILQAGLGMAMSGVSFWGYDLGGFyntgyigneerpNIEDYLSSVQ 555 Blautia sp. CAG:37
Feature 1                   #                             
2F2H_A       530 FGLLS-SHSRLHGSksyRVPWAYDdESCDVVRFFTQLKCRM 569 Escherichia coli
ERH12331     312 WGLVSlSHPRFHGKt-pREPWHYGdEVAATVRRYARLRYRL 351 halophilic archaeon J07HB67
WP_004273387 532 AAVFS-AHMRLHGIg-pREPWSYGpEAEAATLAALKLRYRL 570 Azospirillum amazonense
WP_008306296 532 AAVFS-AHMRLHGIg-qREPWSYGpEAEEAVNQALVLRYRL 570 Glaciecola agarilytica
YP_007173791 539 VGMLG-SHARFHGTt-pREPWYFGdEAEGIVTNWVYFRYRL 577 Deinococcus peraridilitoris DSM 19664
WP_003749860 474 VGMLC-SLARYHGTt-eREPWFYGeQAVNIVRDYSELRYSL 512 Listeria seeligeri
WP_009256265 549 FGFFS-SLSRCHGKt-pREPWNFApETRNIFSYYNQLRHRL 587 Lachnospiraceae bacterium 3_1_57FAA_CT1
YP_053558    554 FGLLT-PFSRYHGVg-aREPWYFGeKDLNISREAAKLKRQL 592 Mesoplasma florum L1
EGQ43003     527 WSALGtTHIRAHGKt-pREPWMFE-EAKDRVKLALNERYKI 565 Candidatus Nanosalina sp. J07AB43
CDE67224     556 MGLWM-PLSRAHGKt-pREPWQYGdMALKEVKKWINFRHRL 594 Blautia sp. CAG:37

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