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Report for CCDS20950.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20950.1 Public Mus musculus 7 Plaur 23 108 98 CCDS HistoryNCBI Gene:18793Re-query CCDS DB by CCDS ID:20950.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20950.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002284.10 ENSMUSP00000002284.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002284.10Link to Ensembl Protein Viewer:ENSMUSP00000002284.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000002284Re-query CCDS DB by Protein ID:ENSMUSP00000002284
Original member Current member NCBI NM_011113.4 NP_035243.1 Accepted alive Link to Nucleotide Sequence:NM_011113.4Link to Protein Sequence:NP_035243.1Re-query CCDS DB by Nucleotide ID:NM_011113Re-query CCDS DB by Protein ID:NP_035243Link to BLAST:NP_035243.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035243.1 327 P35456-1 327 100% 0 0

Chromosomal Locations for CCDS 20950.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 24462510 24462567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24465131 24465241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24466675 24466818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24471899 24472054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24472573 24472707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24474210 24474356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24475239 24475471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGGGACTCCCAAGGCGGCTGCTGCTGCTGCTGTTGCTGGCGACTACCTGTGTCCCAGCCTCCCAGGGCC
TGCAGTGCATGCAGTGTGAGAGTAACCAGAGCTGCCTGGTAGAGGAGTGTGCTCTGGGCCAGGACCTCTG
CAGGACTACCGTGCTTCGGGAATGGCAAGATGATAGAGAGCTGGAGGTGGTGACAAGAGGCTGTGCCCAC
AGCGAAAAGACCAACAGGACCATGAGTTACCGCATGGGCTCCATGATCATCAGCCTGACAGAGACCGTGT
GCGCCACAAACCTCTGCAACAGGCCCAGACCCGGAGCCCGAGGCCGTGCTTTCCCCCAGGGCCGTTACCT
CGAGTGTGCGTCCTGCACCTCTTTGGACCAGAGCTGTGAGAGGGGCCGGGAGCAAAGCCTGCAATGCCGC
TATCCTACAGAGCACTGTATTGAAGTGGTGACCCTCCAGAGCACAGAAAGGAGCTTGAAGGATGAGGACT
ACACCCGAGGCTGTGGCAGTCTTCCCGGATGCCCAGGCACAGCAGGTTTCCATAGCAACCAGACCTTTCA
CTTCCTGAAGTGTTGCAACTACACCCACTGCAATGGTGGCCCAGTTCTGGATCTTCAGAGCTTTCCACCG
AATGGCTTCCAGTGTTACAGCTGTGAGGGGAACAATACCCTTGGGTGTTCCTCCGAAGAGGCGTCTCTCA
TCAACTGCCGGGGACCAATGAATCAGTGCCTGGTGGCTACAGGCTTAGATGTGCTGGGAAACCGGAGTTA
TACCGTAAGAGGCTGCGCCACGGCTTCCTGGTGCCAAGGCTCCCACGTGGCAGACTCCTTCCCGACCCAC
CTCAACGTCTCTGTCTCCTGCTGCCACGGCAGCGGCTGTAACAGCCCCACAGGGGGCGCCCCCAGGCCAG
GCCCTGCTCAACTCAGCCTCATTGCCTCTCTGCTCCTGACCCTCGGACTATGGGGCGTCCTCCTCTGGAC
CTGA

Translation (327 aa):
MGLPRRLLLLLLLATTCVPASQGLQCMQCESNQSCLVEECALGQDLCRTTVLREWQDDRELEVVTRGCAH
SEKTNRTMSYRMGSMIISLTETVCATNLCNRPRPGARGRAFPQGRYLECASCTSLDQSCERGREQSLQCR
YPTEHCIEVVTLQSTERSLKDEDYTRGCGSLPGCPGTAGFHSNQTFHFLKCCNYTHCNGGPVLDLQSFPP
NGFQCYSCEGNNTLGCSSEEASLINCRGPMNQCLVATGLDVLGNRSYTVRGCATASWCQGSHVADSFPTH
LNVSVSCCHGSGCNSPTGGAPRPGPAQLSLIASLLLTLGLWGVLLWT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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