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Report for CCDS25625.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25625.1 Public Mus musculus 11 Fdxr 23 108 98 CCDS HistoryNCBI Gene:14149Re-query CCDS DB by CCDS ID:25625.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25625.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021078.2 ENSMUSP00000021078.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021078.2Link to Ensembl Protein Viewer:ENSMUSP00000021078.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000021078Re-query CCDS DB by Protein ID:ENSMUSP00000021078
Original member Current member NCBI NM_007997.1 NP_032023.1 Accepted alive Link to Nucleotide Sequence:NM_007997.1Link to Protein Sequence:NP_032023.1Re-query CCDS DB by Nucleotide ID:NM_007997Re-query CCDS DB by Protein ID:NP_032023Link to BLAST:NP_032023.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032023.1 494 Q61578 494 100% 0 0

Chromosomal Locations for CCDS 25625.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115268324 115268454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115268578 115268748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115269445 115269616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115269697 115269896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115270015 115270099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115270323 115270430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115271262 115271363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115271657 115271770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115271877 115271999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115272187 115272282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115276079 115276182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115276809 115276887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGGCTCCTCGCTGCTGGCACTGGTGGCGCTGGTCCGCGTGGTCTGGGCTTCGGCCGTCTCCCTCCAGGA
GCACTCCGACCCCAGGCTTCTGCCAGAAGTTCTCCACACAGGAGAAGACCCCTCAGATCTGTGTGGTCGG
CAGTGGCCCAGCTGGCTTCTACACAGCCCAACACTTGTTAAAGCACCACACCCATGCCCACGTAGACATC
TACGAGAAGCAGCTCGTGCCATTCGGCCTGGTGCGCTTTGGTGTGGCACCTGACCATCCTGAAGTAAAGA
ATGTTATCAACACATTTACACAGACAGCCCGCTCAGACCGCTGTGCCTTCCAGGGCAATGTGGTGGTGGG
CAGGGACGTGTCGGTTCCAGAGCTTCGGGAAGCCTACCATGCTGTGGTGCTGAGTTATGGAGCAGAGGAC
CACCAACCCCTGGGAATTCCTGGCGAGGAGCTGCCTGGAGTGGTCTCAGCCCGGGCCTTTGTGGGCTGGT
ACAATGGACTTCCCGAGAACCAGGAGCTGGCGCCAGATCTGAGCTGTGACACGGCTGTAATTCTGGGACA
GGGGAATGTGGCTCTGGATGTGGCCCGGATCCTGCTGACCCCACCTGAGCACCTGGAGAAAACAGACATC
ACAGAGGCTGCATTGGGGGCCCTGAGGCAGAGTCGGGTGAAGACTGTGTGGATAGTGGGCCGGCGTGGGC
CCTTGCAAGTAGCGTTCACCATTAAGGAGCTTCGGGAGATGATTCAGTTGCCAGGAACCCGGCCCATTTT
GGATCCTTCGGATTTCTTGGGCCTCCAGGACAGAATTAAGGATGTCCCCCGTCCAAGGAGGCGGCTAACA
GAACTGCTGCTTCGGACAGCCACGGAGAAGCCAGGAGTGGAAGAGGCTGCCCGCCAGGCACTGGCCTCCC
GGGCCTGGGGTCTCCGCTTTTTCCGAAGCCCCCAGCAGGTGCTCCCTACCCCAGATGGCCAACGGGTAGC
AGGCATCCGCCTGGCAGTTACTAGTCTAGAGGGTGTTGGGGAGTCCACTCGGGCAGTGCCCACAGGAGAC
GTGGAGGACCTCCCTTGTGGACTGCTGCTGAGCAGCGTTGGGTATAAGAGCCGCCCCATCGACCCCAGCG
TGCCCTTTGACCCCAAGCTTGGAGTCATCCCCAACACAGAGGGCCGGGTTGTGAATGTCCCAGGCCTCTA
CTGCAGTGGCTGGGTGAAGAGGGGACCCACAGGTGTCATCACCACAACCATGACAGACAGCTTCCTCACC
AGCCAGGCGCTGCTGGAGGACCTGAAGGCGGGGCTGCTGCCCTCCGGCCCCAGACCCGGCTATGTGGCCA
TTCAAGCCCTGCTCAGCAATCGAGGAGTCCGGCCAGTGTCTTTCTCAGACTGGGAGAAGCTGGATGCTGA
GGAAGTCTCTCGAGGCCAAGGTACTGGGAAACCAAGGGAGAAGCTGGTGGATCGAAGAGAGATGCTGCGG
CTGCTGGGCCACTGA

Translation (494 aa):
MAPRCWHWWRWSAWSGLRPSPSRSTPTPGFCQKFSTQEKTPQICVVGSGPAGFYTAQHLLKHHTHAHVDI
YEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFQGNVVVGRDVSVPELREAYHAVVLSYGAED
HQPLGIPGEELPGVVSARAFVGWYNGLPENQELAPDLSCDTAVILGQGNVALDVARILLTPPEHLEKTDI
TEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPILDPSDFLGLQDRIKDVPRPRRRLT
ELLLRTATEKPGVEEAARQALASRAWGLRFFRSPQQVLPTPDGQRVAGIRLAVTSLEGVGESTRAVPTGD
VEDLPCGLLLSSVGYKSRPIDPSVPFDPKLGVIPNTEGRVVNVPGLYCSGWVKRGPTGVITTTMTDSFLT
SQALLEDLKAGLLPSGPRPGYVAIQALLSNRGVRPVSFSDWEKLDAEEVSRGQGTGKPREKLVDRREMLR
LLGH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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