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Report for CCDS9420.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9420.1 Public Homo sapiens 13 EBPL 24 110 108 CCDS HistoryNCBI Gene:84650Re-query CCDS DB by CCDS ID:9420.1Re-query CCDS DB by GeneID:84650See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9420.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000242827.11 ENSP00000242827.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000242827.11Link to Ensembl Protein Viewer:ENSP00000242827.6Re-query CCDS DB by Nucleotide ID:ENST00000242827Re-query CCDS DB by Protein ID:ENSP00000242827
Original member Current member NCBI NM_032565.5 NP_115954.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032565.5Link to Protein Sequence:NP_115954.1Re-query CCDS DB by Nucleotide ID:NM_032565Re-query CCDS DB by Protein ID:NP_115954Link to BLAST:NP_115954.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115954.1 206 Q9BY08-1 206 100% 0 0

Chromosomal Locations for CCDS 9420.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49660968 49661208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49663057 49663195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49669777 49669846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49691254 49691424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGGGCGCTGAGTGGGAGCTGGGGGCCGAGGCTGGCGGTTCGCTGCTGCTGTGCGCCGCGCTGCTGGCGG
CGGGCTGCGCCCTGGGCCTGCGCCTGGGCCGCGGGCAGGGGGCGGCGGACCGCGGGGCGCTCATCTGGCT
CTGCTACGACGCGCTGGTGCACTTCGCGCTGGAAGGCCCTTTTGTCTACTTGTCTTTAGTAGGAAACGTT
GCAAATTCCGATGGCTTGATTGCTTCTTTATGGAAAGAATATGGCAAAGCTGATGCAAGATGGGTTTATT
TTGATCCAACCATTGTGTCTGTGGAAATTCTGACCGTCGCCCTGGATGGGTCTCTGGCATTGTTCCTCAT
TTATGCCATAGTCAAAGAAAAATATTACCGGCATTTCCTGCAGATCACCCTGTGCGTGTGCGAGCTGTAT
GGCTGCTGGATGACCTTCCTCCCAGAGTGGCTCACCAGAAGCCCCAACCTCAACACCAGCAACTGGCTGT
ACTGTTGGCTTTACCTGTTTTTTTTTAACGGTGTGTGGGTTCTGATCCCAGGACTGCTACTGTGGCAGTC
ATGGCTAGAACTCAAGAAAATGCATCAGAAAGAAACCAGTTCAGTGAAGAAGTTTCAGTGA

Translation (206 aa):
MGAEWELGAEAGGSLLLCAALLAAGCALGLRLGRGQGAADRGALIWLCYDALVHFALEGPFVYLSLVGNV
ANSDGLIASLWKEYGKADARWVYFDPTIVSVEILTVALDGSLALFLIYAIVKEKYYRHFLQITLCVCELY
GCWMTFLPEWLTRSPNLNTSNWLYCWLYLFFFNGVWVLIPGLLLWQSWLELKKMHQKETSSVKKFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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