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Report for CCDS6182.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6182.1 Public Homo sapiens 8 MTFR1 24 110 108 CCDS HistoryNCBI Gene:9650Re-query CCDS DB by CCDS ID:6182.1Re-query CCDS DB by GeneID:9650See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6182.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262146.9 ENSP00000262146.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262146.9Link to Ensembl Protein Viewer:ENSP00000262146.4Re-query CCDS DB by Nucleotide ID:ENST00000262146Re-query CCDS DB by Protein ID:ENSP00000262146
Original member Current member NCBI NM_014637.4 NP_055452.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014637.4Link to Protein Sequence:NP_055452.3Re-query CCDS DB by Nucleotide ID:NM_014637Re-query CCDS DB by Protein ID:NP_055452Link to BLAST:NP_055452.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055452.3 333 Q15390-1 333 100% 0 0

Chromosomal Locations for CCDS 6182.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 65669953 65670018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 65682353 65682451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 65693644 65693759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 65704694 65704929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 65707010 65707256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 65707843 65708011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 65708976 65709044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGCTTGGCTGGATTAAGCGCCTAATTAGGATGGTTTTTCAACAAGTTGGAGTAAGCATGCAATCGGTAC
TTTGGTCTAGGAAGCCATATGGTTCGTCTCGAAGTATCGTAAGGAAAATTGGTACTAATTTGTCTCTGAT
TCAGTGTCCAAGAGTTCAGTTTCAGATTAACAGCCATGCAACAGAATGGAGTCCCAGCCACCCAGGAGAG
GATGCAGTGGCGTCTTTTGCTGATGTTGGATGGGTAGCCAAAGAAGAAGGAGAGTGTTCAGCAAGACTAA
GGACAGAGGTCAGATCAAGGCCACCCCTTCAGGATGACCTTCTTTTCTTTGAGAAGGCCCCAAGCAGACA
GATTTCCTTACCAGACTTGTCTCAAGAAGAGCCTCAGCTGAAGACCCCAGCGCTGGCAAATGAGGAAGCA
CTGCAGAAGATTTGCGCTCTCGAAAATGAACTTGCTGCTCTCAGAGCTCAGATTGCCAAAATTGTGACCC
AGCAGGAGCAGCAAAATCTCACTGCAGGTGACTTAGATTCTACCACATTTGGTACCATACCACCACACCC
TCCACCTCCCCCACCGCCCCTGCCTCCCCCTGCACTGGGGCTCCACCAAAGTACATCTGCTGTTGATCTG
ATTAAAGAACGAAGAGAGAAAAGAGCCAATGCTGGAAAGACTTTGGTTAAGAACAATCCAAAGAAACCTG
AAATGCCAAATATGCTAGAGATCCTTAAAGAGATGAACAGTGTAAAACTTCGGTCAGTGAAGAGGTCAGA
GCAAGATGTGAAGCCCAAGCCAGTGGATGCTACTGACCCTGCTGCCCTCATAGCAGAGGCTCTGAAAAAG
AAATTTGCTTATCGGTATCGAAGTGATAGCCAAGATGAAGTTGAAAAAGGAATTCCAAAGTCTGAATCAG
AGGCCACCTCAGAGAGAGTGTTGTTTGGGCCACACATGTTGAAGCCAACAGGAAAAATGAAGGCTTTAAT
TGAAAATGTATCAGACTCCTAA

Translation (333 aa):
MLGWIKRLIRMVFQQVGVSMQSVLWSRKPYGSSRSIVRKIGTNLSLIQCPRVQFQINSHATEWSPSHPGE
DAVASFADVGWVAKEEGECSARLRTEVRSRPPLQDDLLFFEKAPSRQISLPDLSQEEPQLKTPALANEEA
LQKICALENELAALRAQIAKIVTQQEQQNLTAGDLDSTTFGTIPPHPPPPPPPLPPPALGLHQSTSAVDL
IKERREKRANAGKTLVKNNPKKPEMPNMLEILKEMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEALKK
KFAYRYRSDSQDEVEKGIPKSESEATSERVLFGPHMLKPTGKMKALIENVSDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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