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Report for CCDS46240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46240.1 Public Homo sapiens 2 SELENOI 24 110 108 CCDS HistoryNCBI Gene:85465Re-query CCDS DB by CCDS ID:46240.1Re-query CCDS DB by GeneID:85465See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 46240.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260585.12 ENSP00000260585.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000260585.12Link to Ensembl Protein Viewer:ENSP00000260585.7Re-query CCDS DB by Nucleotide ID:ENST00000260585Re-query CCDS DB by Protein ID:ENSP00000260585
Original member Current member NCBI NM_033505.4 NP_277040.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033505.4Link to Protein Sequence:NP_277040.1Re-query CCDS DB by Nucleotide ID:NM_033505Re-query CCDS DB by Protein ID:NP_277040Link to BLAST:NP_277040.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_277040.1 397 Q9C0D9 397 100% 0 0

Chromosomal Locations for CCDS 46240.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 26346233 26346289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26364302 26364370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26364832 26364940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26367146 26367220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26373367 26373629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26375040 26375148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26383299 26383347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26384959 26385139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26386354 26386536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26389005 26389103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 387

Nucleotide Sequence (1194 nt):
ATGGCTGGCTACGAATACGTGAGCCCGGAGCAGCTGGCTGGCTTTGATAAGTACAAGTACAGTGCTGTGG
ATACCAATCCACTTTCTCTGTATGTCATGCATCCATTCTGGAACACTATAGTAAAGGTATTTCCTACTTG
GCTGGCGCCCAATCTGATAACTTTTTCTGGCTTTCTGCTGGTCGTATTCAATTTTCTGCTAATGGCATAC
TTTGATCCTGACTTTTATGCCTCAGCACCAGGTCACAAGCACGTGCCTGACTGGGTTTGGATTGTAGTGG
GCATCCTCAACTTCGTAGCCTACACTCTAGATGGTGTGGACGGAAAGCAAGCTCGCAGAACCAATTCTAG
CACTCCCTTAGGGGAGCTTTTTGATCATGGCCTGGATAGTTGGTCATGTGTTTACTTTGTTGTGACTGTT
TATTCCATCTTTGGAAGAGGATCAACTGGTGTCAGTGTTTTTGTTCTTTATCTCCTGCTATGGGTAGTTT
TGTTTTCTTTCATCCTGTCCCACTGGGAAAAGTATAACACAGGGATTCTTTTCCTGCCATGGGGATATGA
CATTAGCCAGGTGACTATTTCTTTTGTCTACATAGTGACTGCAGTTGTGGGAGTTGAGGCCTGGTATGAA
CCTTTCCTGTTTAATTTCTTATATAGAGACCTATTCACTGCAATGATTATTGGTTGTGCATTATGTGTGA
CTCTTCCAATGAGTTTATTAAACTTTTTCAGAAGCTATAAAAATAACACCTTGAAACTCAATTCAGTCTA
TGAAGCTATGGTTCCCTTATTTTCTCCATGCTTGCTGTTCATTTTGTCTACAGCGTGGATCCTTTGGTCA
CCTTCAGATATTTTAGAGCTACATCCTAGAGTATTCTACTTTATGGTTGGAACAGCTTTTGCCAACAGTA
CATGTCAGCTGATTGTTTGCCAAATGAGTAGTACCCGGTGTCCAACTTTGAATTGGTTGCTGGTTCCTCT
CTTCTTGGTTGTCTTAGTGGTAAACCTAGGAGTAGCCTCTTACGTTGAGAGCATTCTCCTGTATACATTA
ACAACTGCTTTTACTCTGGCCCACATCCATTATGGAGTACGAGTGGTAAAGCAGCTGAGCAGCCATTTTC
AGATTTACCCCTTCTCATTGAGGAAACCAAACTCAGATTGACTAGGAATGGAAGAAAAGAATATTGGCCT
GTAA

Translation (397 aa):
MAGYEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLLVVFNFLLMAY
FDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTV
YSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQVTISFVYIVTAVVGVEAWYE
PFLFNFLYRDLFTAMIIGCALCVTLPMSLLNFFRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWS
PSDILELHPRVFYFMVGTAFANSTCQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTL
TTAFTLAHIHYGVRVVKQLSSHFQIYPFSLRKPNSDULGMEEKNIGL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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