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Report for CCDS1393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1393.1 Public Homo sapiens 1 LHX9 24 110 108 CCDS HistoryNCBI Gene:56956Re-query CCDS DB by CCDS ID:1393.1Re-query CCDS DB by GeneID:56956See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1393.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367387.6 ENSP00000356357.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367387.6Link to Ensembl Protein Viewer:ENSP00000356357.4Re-query CCDS DB by Nucleotide ID:ENST00000367387Re-query CCDS DB by Protein ID:ENSP00000356357
Original member Current member NCBI NM_020204.3 NP_064589.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020204.3Link to Protein Sequence:NP_064589.2Re-query CCDS DB by Nucleotide ID:NM_020204Re-query CCDS DB by Protein ID:NP_064589Link to BLAST:NP_064589.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064589.2 397 Q9NQ69-1 397 100% 0 0

Chromosomal Locations for CCDS 1393.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 197917824 197917997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197919972 197920174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197921304 197921659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197927591 197927793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197929002 197929259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGGAAATAGTGGGGTGCCGAGCAGAAGACAACTCGTGTCCTTTCCGCCCCCCAGCCATGCTCTTTCACG
GGATCTCCGGAGGCCACATCCAAGGCATCATGGAGGAGATGGAGCGCAGATCCAAGACTGAGGCCCGTCT
GGCCAAAGGCGCCCAGCTCAACGGCCGCGACGCGGGCATGCCCCCGCTCAGCCCGGAGAAGCCCGCCCTG
TGCGCCGGCTGCGGGGGCAAGATCTCGGACAGGTACTATCTGCTGGCTGTGGACAAACAGTGGCATCTGA
GATGCCTGAAGTGCTGTGAATGTAAGCTGGCCCTCGAGTCCGAGCTCACCTGCTTTGCCAAGGACGGTAG
CATTTACTGCAAGGAGGATTACTACAGAAGGTTCTCTGTGCAGAGATGTGCCCGCTGCCACCTTGGCATT
TCCGCCTCGGAGATGGTCATGCGCGCCCGAGACTCTGTCTACCACCTGAGCTGCTTCACCTGCTCCACTT
GCAACAAGACTCTGACCACGGGCGACCATTTCGGCATGAAGGACAGCCTGGTGTACTGCCGCGCCCACTT
CGAGACCCTCTTGCAAGGAGAGTATCCACCGCAGCTGAGCTACACGGAGCTGGCGGCCAAGAGCGGCGGC
CTGGCCCTGCCTTACTTCAACGGTACGGGCACCGTGCAGAAAGGGCGGCCCCGGAAGCGGAAGAGCCCAG
CGCTGGGAGTGGACATCGTCAATTACAACTCAGGTTGTAATGAGAATGAGGCAGACCACTTGGACCGGGA
CCAGCAGCCTTATCCACCCTCGCAGAAGACCAAGCGCATGCGAACCTCTTTCAAGCATCACCAGCTCCGG
ACCATGAAATCCTACTTTGCCATCAACCACAACCCGGATGCCAAGGACCTCAAGCAGCTTGCCCAGAAAA
CAGGTCTGACCAAAAGAGTTTTGCAGGTTTGGTTCCAAAACGCACGAGCCAAATTCAGAAGGAACCTTTT
GCGGCAGGAGAATGGGGGTGTTGATAAAGCTGACGGCACGTCGCTTCCGGCCCCGCCCTCAGCAGACAGC
GGAGCTCTCACTCCACCCGGCACTGCGACCACTTTAACAGACCTGACCAATCCCACTATCACTGTAGTGA
CATCCGTGACCTCTAACATGGACAGCCACGAATCCGGAAGCCCCTCACAAACTACCTTAACAAACCTTTT
CTAA

Translation (397 aa):
MEIVGCRAEDNSCPFRPPAMLFHGISGGHIQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPEKPAL
CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGI
SASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGG
LALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLR
TMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTSLPAPPSADS
GALTPPGTATTLTDLTNPTITVVTSVTSNMDSHESGSPSQTTLTNLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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