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Report for CCDS12111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12111.1 Public Homo sapiens 19 MRPL54 24 110 108 CCDS HistoryNCBI Gene:116541Re-query CCDS DB by CCDS ID:12111.1Re-query CCDS DB by GeneID:116541See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12111.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330133.5 ENSP00000331849.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330133.5Link to Ensembl Protein Viewer:ENSP00000331849.3Re-query CCDS DB by Nucleotide ID:ENST00000330133Re-query CCDS DB by Protein ID:ENSP00000331849
Original member Current member NCBI NM_172251.3 NP_758455.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_172251.3Link to Protein Sequence:NP_758455.1Re-query CCDS DB by Nucleotide ID:NM_172251Re-query CCDS DB by Protein ID:NP_758455Link to BLAST:NP_758455.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758455.1 138 Q6P161 138 100% 0 0

Chromosomal Locations for CCDS 12111.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3762701 3762818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3765166 3765331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3767261 3767393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (417 nt):
ATGGCGACCAAACGCCTTTTCGGGGCTACCCGGACGTGGGCCGGCTGGGGGGCCTGGGAGCTCCTAAACC
CCGCCACTTCCGGAAGACTCCTGGCCCGGGATTATGCCAAGAAACCAGTTATGAAGGGGGCCAAATCGGG
AAAAGGTGCAGTGACCAGCGAGGCCCTCAAGGACCCCGACGTATGCACAGATCCTGTCCAGCTCACCACA
TATGCCATGGGCGTCAACATCTACAAGGAAGGGCAGGATGTACCCCTGAAACCGGATGCTGAGTACCCTG
AATGGCTGTTCGAGATGAACTTGGGTCCCCCAAAGACCCTGGAGGAGCTGGACCCCGAGAGCCGGGAGTA
CTGGCGGCGGCTGCGGAAACAGAACATCTGGCGCCACAACCGGCTGAGCAAGAACAAGAGGTTGTAG

Translation (138 aa):
MATKRLFGATRTWAGWGAWELLNPATSGRLLARDYAKKPVMKGAKSGKGAVTSEALKDPDVCTDPVQLTT
YAMGVNIYKEGQDVPLKPDAEYPEWLFEMNLGPPKTLEELDPESREYWRRLRKQNIWRHNRLSKNKRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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