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Report for CCDS10569.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10569.1 Public Homo sapiens 16 XYLT1 24 110 108 CCDS HistoryNCBI Gene:64131Re-query CCDS DB by CCDS ID:10569.1Re-query CCDS DB by GeneID:64131See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10569.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261381.7 ENSP00000261381.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261381.7Link to Ensembl Protein Viewer:ENSP00000261381.6Re-query CCDS DB by Nucleotide ID:ENST00000261381Re-query CCDS DB by Protein ID:ENSP00000261381
Original member Current member NCBI NM_022166.4 NP_071449.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022166.4Link to Protein Sequence:NP_071449.1Re-query CCDS DB by Nucleotide ID:NM_022166Re-query CCDS DB by Protein ID:NP_071449Link to BLAST:NP_071449.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071449.1 959 Q86Y38 959 100% 0 0

Chromosomal Locations for CCDS 10569.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17108695 17109017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17117646 17117979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17127666 17127861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17134473 17134735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17138355 17138531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17141153 17141369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17158829 17158909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17198212 17198414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17200482 17200654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17258988 17259498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17358012 17358050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17470434 17470796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2880 nt):
ATGGTGGCGGCGCCGTGCGCCCGGAGGCTGGCCCGGCGCTCGCACTCGGCGCTGCTCGCGGCGCTCACGG
TGCTGCTGCTGCAGACGCTGGTCGTGTGGAATTTCAGCAGCCTCGACTCCGGGGCCGGGGAGCGCCGCGG
GGGCGCAGCGGTCGGCGGCGGGGAGCAGCCGCCCCCGGCCCCGGCCCCGCGCCGGGAGCGCCGGGACCTG
CCCGCCGAGCCGGCTGCAGCCCGAGGAGGAGGAGGAGGCGGCGGCGGAGGAGGAGGAGGACGGGGGCCCC
AGGCGCGGGCGCGGGGAGGCGGCCCCGGAGAACCGCGGGGACAGCAGCCGGCCAGCCGGGGGGCACTGCC
CGCCCGGGCTCTGGATCCACACCCAAGTCCGCTCATCACCCTGGAGACTCAGGATGGCTACTTTTCTCAT
CGGCCGAAAGAGAAAGTGCGAACAGACAGCAACAACGAGAACTCTGTCCCCAAAGACTTTGAGAATGTCG
ACAACAGCAACTTCGCACCCAGGACTCAAAAGCAGAAGCACCAGCCTGAGTTGGCGAAGAAGCCACCGAG
TAGACAGAAGGAGCTTTTGAAAAGGAAGCTGGAACAGCAGGAGAAAGGAAAAGGACATACATTCCCTGGG
AAAGGCCCCGGTGAGGTGCTGCCTCCCGGGGACAGAGCCGCAGCCAACAGCAGCCACGGGAAGGATGTGT
CCAGACCGCCTCATGCCAGGAAAACTGGGGGCAGCTCCCCCGAGACCAAGTATGACCAGCCCCCTAAGTG
TGACATCTCAGGCAAGGAGGCCATCTCTGCCCTGTCCCGTGCTAAGTCCAAGCACTGCCGCCAGGAGATT
GGGGAGACTTACTGCCGCCACAAGTTAGGGCTGCTGATGCCTGAGAAGGTGACTCGGTTCTGCCCCCTCG
AGGGTAAAGCCAACAAGAACGTGCAGTGGGACGAGGACTCCGTGGAGTACATGCCAGCCAACCCGGTCAG
AATCGCCTTTGTCCTGGTGGTCCACGGCCGTGCCTCTCGGCAGTTGCAGCGCATGTTCAAGGCCATCTAC
CACAAAGACCACTTCTACTACATCCACGTGGACAAGCGCTCTAATTACCTGCATCGGCAAGTGCTCCAGG
TCTCCAGGCAGTACAGCAATGTCCGCGTCACCCCCTGGAGAATGGCCACCATCTGGGGAGGAGCCAGCCT
CCTGTCCACCTACCTGCAGAGCATGCGGGACCTCCTGGAGATGACCGACTGGCCCTGGGACTTCTTCATC
AACCTGAGTGCGGCCGACTACCCCATCAGGACAAATGACCAGTTGGTGGCGTTTCTCTCCCGATACCGAG
ATATGAATTTCTTGAAGTCACACGGCCGGGACAATGCAAGGTTCATTCGGAAGCAGGGCCTGGATCGGCT
CTTCCTGGAGTGCGACGCTCACATGTGGCGCCTGGGAGATCGGCGGATCCCAGAGGGCATTGCCGTGGAT
GGCGGTTCGGACTGGTTCCTGCTGAACCGGAGGTTTGTAGAATATGTGACCTTCTCCACAGACGATCTGG
TGACCAAGATGAAACAGTTCTACTCCTACACCCTGCTTCCTGCTGAGTCCTTCTTCCATACGGTCCTGGA
GAACAGCCCCCACTGCGACACCATGGTGGACAACAACCTGCGCATCACCAACTGGAATCGCAAGCTGGGC
TGCAAGTGCCAGTACAAGCACATCGTGGACTGGTGCGGCTGCTCCCCCAATGACTTCAAGCCGCAGGACT
TCCACCGCTTCCAGCAGACAGCCCGGCCTACCTTCTTTGCCCGCAAGTTTGAAGCCGTGGTGAATCAGGA
AATCATTGGGCAGCTGGACTATTACCTGTACGGGAACTACCCTGCAGGTACCCCGGGCCTGCGCTCCTAC
TGGGAGAATGTCTACGATGAGCCTGACGGCATCCACAGCCTGAGCGACGTGACACTCACCTTGTACCACT
CCTTTGCCCGCCTGGGTCTTCGACGGGCCGAGACGTCCCTGCACACGGATGGGGAGAACAGCTGCCGATA
CTACCCAATGGGCCACCCAGCATCTGTGCACCTCTACTTCCTTGCTGACCGCTTCCAGGGCTTTCTGATC
AAGCATCATGCTACCAATCTGGCTGTGAGCAAACTAGAGACTCTGGAGACCTGGGTGATGCCGAAAAAAG
TCTTCAAGATCGCAAGCCCACCCAGTGACTTTGGGAGGCTTCAGTTTTCCGAGGTCGGCACTGACTGGGA
TGCCAAGGAGAGGCTATTCCGCAACTTTGGGGGTCTTCTGGGGCCCATGGATGAGCCGGTGGGTATGCAG
AAGTGGGGGAAGGGACCTAATGTGACCGTGACCGTCATTTGGGTGGATCCCGTCAATGTCATCGCAGCCA
CCTACGACATCCTCATTGAGTCCACTGCCGAATTCACACACTACAAGCCCCCTTTGAACTTGCCCCTGAG
GCCTGGGGTCTGGACAGTGAAAATTCTCCACCACTGGGTGCCAGTTGCAGAGACCAAATTCCTCGTTGCG
CCTCTGACCTTCTCGAACAGGCAGCCCATCAAACCTGAGGAGGCACTGAAGCTGCACAATGGGCCCCTCC
GCAATGCCTACATGGAGCAGAGCTTCCAGAGCCTAAACCCCGTCCTCAGCCTGCCCATCAACCCCGCCCA
GGTGGAACAGGCACGGAGGAACGCAGCCTCCACGGGCACAGCGCTGGAGGGATGGCTGGACTCGTTGGTG
GGCGGGATGTGGACTGCCATGGACATCTGTGCCACGGGCCCCACAGCCTGCCCGGTCATGCAGACCTGCA
GCCAGACGGCCTGGAGCTCCTTCAGCCCTGACCCCAAGTCGGAGCTGGGGGCAGTCAAACCTGATGGCCG
GCTCAGGTAG

Translation (959 aa):
MVAAPCARRLARRSHSALLAALTVLLLQTLVVWNFSSLDSGAGERRGGAAVGGGEQPPPAPAPRRERRDL
PAEPAAARGGGGGGGGGGGGRGPQARARGGGPGEPRGQQPASRGALPARALDPHPSPLITLETQDGYFSH
RPKEKVRTDSNNENSVPKDFENVDNSNFAPRTQKQKHQPELAKKPPSRQKELLKRKLEQQEKGKGHTFPG
KGPGEVLPPGDRAAANSSHGKDVSRPPHARKTGGSSPETKYDQPPKCDISGKEAISALSRAKSKHCRQEI
GETYCRHKLGLLMPEKVTRFCPLEGKANKNVQWDEDSVEYMPANPVRIAFVLVVHGRASRQLQRMFKAIY
HKDHFYYIHVDKRSNYLHRQVLQVSRQYSNVRVTPWRMATIWGGASLLSTYLQSMRDLLEMTDWPWDFFI
NLSAADYPIRTNDQLVAFLSRYRDMNFLKSHGRDNARFIRKQGLDRLFLECDAHMWRLGDRRIPEGIAVD
GGSDWFLLNRRFVEYVTFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPHCDTMVDNNLRITNWNRKLG
CKCQYKHIVDWCGCSPNDFKPQDFHRFQQTARPTFFARKFEAVVNQEIIGQLDYYLYGNYPAGTPGLRSY
WENVYDEPDGIHSLSDVTLTLYHSFARLGLRRAETSLHTDGENSCRYYPMGHPASVHLYFLADRFQGFLI
KHHATNLAVSKLETLETWVMPKKVFKIASPPSDFGRLQFSEVGTDWDAKERLFRNFGGLLGPMDEPVGMQ
KWGKGPNVTVTVIWVDPVNVIAATYDILIESTAEFTHYKPPLNLPLRPGVWTVKILHHWVPVAETKFLVA
PLTFSNRQPIKPEEALKLHNGPLRNAYMEQSFQSLNPVLSLPINPAQVEQARRNAASTGTALEGWLDSLV
GGMWTAMDICATGPTACPVMQTCSQTAWSSFSPDPKSELGAVKPDGRLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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