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Report for CCDS94514.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94514.1 Public Homo sapiens 9 FAM78A 24 110 108 CCDS HistoryNCBI Gene:286336Re-query CCDS DB by CCDS ID:94514.1Re-query CCDS DB by GeneID:286336See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94514.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372269.7 ENSP00000361343.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372269.7Link to Ensembl Protein Viewer:ENSP00000361343.3Re-query CCDS DB by Nucleotide ID:ENST00000372269Re-query CCDS DB by Protein ID:ENSP00000361343
Original member Current member NCBI NM_001400583.1 NP_001387512.1 Accepted alive Link to Nucleotide Sequence:NM_001400583.1Link to Protein Sequence:NP_001387512.1Re-query CCDS DB by Nucleotide ID:NM_001400583Re-query CCDS DB by Protein ID:NP_001387512Link to BLAST:NP_001387512.1

Chromosomal Locations for CCDS 94514.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 131260822 131261350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 131263478 131263599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 131264584 131264627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 131270276 131270423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGACAAGTTACATACTGATATCCTTTGTTTTGCTGATTGGAGTTGGGTGCATTGAAAAAGATCAGTCGT
GCCCAGTGTTTGGGGGAAGGAAGCGTCTTCACCTGTTGTTTGTGGGAGGACAGTTGAGGCAGGTGAGGAT
GCTGAGAGGGTCTCCAGAAGCTTCCACTGACTGCTGTTGGCTGCACCAGGCAACAGGGTCTGGCTCTGTC
ACCCAGGCTGGAGTGCAATGGTATGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCT
CCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTCCAGCTGGGAGCTCCCCGACCTCCAGGAGGGCAA
GATCCAAGCCATCAGCGACTCGGATGGGGTGAACTACCCCTGGTACGGCAACACCACAGAGACCTGCACC
ATCGTGGGCCCCACCAAGAGGGACTCCAAGTTCATCATCAGCATGAATGACAACTTTTACCCCAGCGTCA
CATGGGCCGTGCCCGTCAGCGAGAGCAACGTGGCCAAGCTCACCAATATCTACCGGGACCAGAGCTTCAC
CACCTGGCTGGTGGCCACCAACACCTCCACCAACGACATGATCATCCTGCAGACGCTGCACTGGCGCATG
CAGCTCAGCATCGAGGTGAACCCCAACCGGCCCCTGGGCCAGCGCGCCCGGCTGCGGGAGCCCATCGCCC
AGGACCAGCCCAAAATCCTGAGCAAGAATGAGCCCATCCCGCCCAGCGCCCTGGTCAAGCCCAATGCCAA
CGATGCCCAGGTCCTCATGTGGCGGCCCAAGTACGGGCAGCCGCTGGTGGTGATCCCGCCCAAGCACCGG
TGA

Translation (280 aa):
MTSYILISFVLLIGVGCIEKDQSCPVFGGRKRLHLLFVGGQLRQVRMLRGSPEASTDCCWLHQATGSGSV
TQAGVQWYDLGSLQPLPPRFKRFSCLSLPSSWDYRSSWELPDLQEGKIQAISDSDGVNYPWYGNTTETCT
IVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIILQTLHWRM
QLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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