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Report for CCDS20363.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20363.1 Public Mus musculus 6 Slc41a3 23 108 98 CCDS HistoryNCBI Gene:71699Re-query CCDS DB by CCDS ID:20363.1Re-query CCDS DB by GeneID:71699See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20363.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032177.9 ENSMUSP00000032177.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032177.9Link to Ensembl Protein Viewer:ENSMUSP00000032177.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032177Re-query CCDS DB by Protein ID:ENSMUSP00000032177
Original member Current member NCBI NM_001037493.2 NP_001032570.1 Accepted alive Link to Nucleotide Sequence:NM_001037493.2Link to Protein Sequence:NP_001032570.1Re-query CCDS DB by Nucleotide ID:NM_001037493Re-query CCDS DB by Protein ID:NP_001032570Link to BLAST:NP_001032570.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032570.1 462 Q921R8-2 462 100% 0 0

Chromosomal Locations for CCDS 20363.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 90619451 90619645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90624812 90624919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90626380 90626451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90633611 90633755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90635250 90635396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90636857 90637001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90640884 90640963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90642211 90642345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90644085 90644233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 90645569 90645781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGGTCGTCACTCAGCTCAGCCTTGAGTTCCGCTTTCAGGGCAAGAAGCTTCGAGGCTTCAGCTGTGAGC
TCACCCGCTCCCCTCATGGGATCCTCCCTGAGCCTGTCCTCACCACCACCTGCCAGGTCGCCATACCTAT
CCTGCTGTCCGGCCTGGGCATGATGACGGCTGGCTTGGTGATGAACACTGTCCAACACTGGCCAGTGTTC
AAAGATGTTAAAGACCTGATGACGTTGGTGCCACCCCTCGTCGGTCTGAAGGGAAACCTGGAAATGACGC
TGGCGTCTCGGCTCTCCACGTCTGCCAACACTGGGCAAATCGATGACCGCCAGGAGAGGTACAAAATCAT
CAGCAGCAACCTCGCTGTGGTTCAGGTGCAGGCCACTGTTGTGGGGCTCCTGGCTGCAGTGGCCTCCCTG
ATGCTGGGCACAGTGTCCCACGAGGAGTTCGATTGGTCCAAGGTGGCCTTGCTGTGCACGAGCAGCGTCA
TCACCGCCTTCCTTGCTGCCTTGGCCCTAGGAATTCTAATGATCTGCATAGTGATTGGTGCTCGGAAGTT
TGGGGTCAACCCTGATAACATCGCCACACCCATTGCAGCCAGCCTGGGCGACCTCATCACCCTGTCCATC
CTGGCCCTCATGAGCAGTTTCTTCTACAGCCACAAAGACACATGGTATCTGACGCCTCTGGTCTGTGTCG
GCTTCTTGGCTCTCACCCCTCTGTGGCTCTTCATTGCCAAGCAGAACCCGCCCATCATGAAGATCCTGAA
GTATGGGTGGTTTCCCATCATCCTGGCTATGATCATCAGCAGTTTCGGAGGTCTCATCCTGAGCAAAACC
ATTTCGAAACATGAATTTAAAGGCATGGCTGTCCTGACTCCAGTCATGTGTGGTGTTGGTGGCAACCTGG
TGGCCATTCAGACTAGCCGCATCTCCACCTTTCTGCATATGTGGAGCACACCCGGGGTCCTCCCTGTCCA
GATGAAAAGATTCTGGCCTAACCCCTGCTTCATTTTCTGCTCTTCAGAAATCAATTCTGTGTCAGCACGA
GTCCTGCTCTTTCTGGTGGTCCCAGGACACCTGATTTTCTTCTACCTCATCTGCCTGGTGGAAGGCCAGT
CAGTGACAAACAGCAAGATCTTCATATTGCTGTACCTGGTGGCAGGCGTGGTCCAGGTGGTCATCCTGCT
GTACCTGGCAGAAGTGACAGTTCGGCTGACATGGCACCAAGCCCTGGATCCTGACAACCACTGCATCCCC
TACCTCACGGGGCTGGGGGACCTGCTGGGCACTAGCCTGCTGGCACTGTGCTTCTTCCTGGACTGGTTAC
TGAGGGGCAGAGCTAATCTTCAGGAGCTGGTCTCAGAGCTGGTTTCTGTGCCTCCCTGA

Translation (462 aa):
MVVTQLSLEFRFQGKKLRGFSCELTRSPHGILPEPVLTTTCQVAIPILLSGLGMMTAGLVMNTVQHWPVF
KDVKDLMTLVPPLVGLKGNLEMTLASRLSTSANTGQIDDRQERYKIISSNLAVVQVQATVVGLLAAVASL
MLGTVSHEEFDWSKVALLCTSSVITAFLAALALGILMICIVIGARKFGVNPDNIATPIAASLGDLITLSI
LALMSSFFYSHKDTWYLTPLVCVGFLALTPLWLFIAKQNPPIMKILKYGWFPIILAMIISSFGGLILSKT
ISKHEFKGMAVLTPVMCGVGGNLVAIQTSRISTFLHMWSTPGVLPVQMKRFWPNPCFIFCSSEINSVSAR
VLLFLVVPGHLIFFYLICLVEGQSVTNSKIFILLYLVAGVVQVVILLYLAEVTVRLTWHQALDPDNHCIP
YLTGLGDLLGTSLLALCFFLDWLLRGRANLQELVSELVSVPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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