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Report for CCDS85413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85413.1 Public Mus musculus 7 Atxn2l 23 108 98 CCDS HistoryNCBI Gene:233871Re-query CCDS DB by CCDS ID:85413.1Re-query CCDS DB by GeneID:233871See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85413.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167759.7 ENSMUSP00000132959.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167759.7Link to Ensembl Protein Viewer:ENSMUSP00000132959.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167759Re-query CCDS DB by Protein ID:ENSMUSP00000132959
Original member NCBI NM_001347658.1 NP_001334587.1 Updated not alive Link to Nucleotide Sequence:NM_001347658.1Link to Protein Sequence:NP_001334587.1Re-query CCDS DB by Nucleotide ID:NM_001347658Re-query CCDS DB by Protein ID:NP_001334587
Current member NCBI NM_001347658.2 NP_001334587.1 Accepted alive Link to Nucleotide Sequence:NM_001347658.2Link to Protein Sequence:NP_001334587.1Re-query CCDS DB by Nucleotide ID:NM_001347658Re-query CCDS DB by Protein ID:NP_001334587Link to BLAST:NP_001334587.1

Chromosomal Locations for CCDS 85413.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126492669 126493001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126493164 126493376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126493553 126493674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126493761 126493890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126494139 126494329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126494420 126494492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126494577 126494723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126495200 126495269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126495360 126495655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126495821 126495891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126496289 126496360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126496437 126496646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126497254 126497364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126497493 126497668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126498105 126498305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126499150 126499241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126500129 126500253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126500723 126500873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126501103 126501174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126501256 126501312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126501422 126501458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126502296 126502330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2985 nt):
ATGCTGTCTTATGACTCGGGCATTGGCTTGCCCCGGGGACAGACCACCGGAAAGGGACCCCCACAGTCAC
CCGTGTTTGAAGGTGTCTATAACAATTCCAGGATGCTGCATTTCCTGACAGCTGTAGTGGGTTCTACTTG
TGACGTAAAGGTGAAAAATGGCACCACTTACGAGGGCATTTTCAAGACTCTGAGCTCAAAGTTTGAACTG
GCAGTTGACGCGGTGCATCGGAAAGCATCTGAGCCAGCAGGTGGGCCTCGCCGGGAAGACATTGTGGACA
CCATGGTGTTTAAACCAAGCGACGTTCTGCTTGTCCACTTCCGAAATGTTGACTTCAATTATGCTACTAA
AGATAAGTTCACTGACTCAGCCATTGCCATGAACTCTAAGGTGAATGGAGAACACAAAGAGAAGGTGCTT
CAACGTTGGGAGGGCGGTGACAGCAACAGTGACGACTACGATCTGGAATCCGATATGTCTAATGGATGGG
ATCCCAATGAGATGTTCAAATTTAATGAGGAGAACTATGGAGTGAAGACCACCTATGACAGCAGTCTATC
TTCTTACACGGTTCCCTTAGAAAAGGACAACTCTGAAGAGTTTCGGCAGCGGGAGCTTCGAGCGGCCCAG
TTGGCTCGAGAGATTGAGTCTAGTCCCCAGTACCGCCTACGGATTGCTATGGAAAATGACGATGGGAGAA
CAGAGGAGGAGAAGCACAGTGCTGTTCAGCGGCAGGGGTCTGGGCGGGAGAGCCCCAGCTTGGTATCCAG
GGAGGGGAAGTATATCCCCCTGCCTCAGCGAGTTCGAGAAGGTCCCCGGGGAGGAGTTCGATGCAGCAGT
TCTCGAGGAGGGCGCCCTGGCCTTAGCTCTTTGCCACCTCGTGGCCCTCACCATCTTGACAACAGCAGTC
CTGGCCCTGGGTCTGAGGCACGTGGTATCAATGGAGGTCCTTCCCGCATGTCCCCCAAGGCACAGCGGCC
TCTGAGAGGTGCCAAGACCTTATCTTCACCCAGCAATAGGCCTTCTGGAGAAGCTTCTGTTCCTCCAACA
TCTGCAGCTCTCCCTTTTCTTCCAGTGGGCCGGATGTACCCTCCACGGTCTCCCAAGTCTGCTGCCCCTG
CCCCAGTCTCAGCTTCCTGTCCTGAGCCTCCCATTGGTTCGGCAGTGGCGTCCTCTGCCTCCATCCCTGT
GACATCATCAGTTGTGGATCCTGGTGCAGGCTCTATTTCCCCGGCATCTCCAAAACTCTCCCTGACCCCT
ACAGATGTAAAAGAACTCCCAACCAAGGAGCCCAGTAGGAATTTGGAAGCCCAAGAACTGGCCCGCATAG
CTGGGAAAGTCCCTGGCCTTCAGAATGAACAAAAACGATTTCAGTTGGAAGAACTGAGAAAATTTGGGGC
CCAGTTTAAGCTTCAACCTAGTAGCTCCCCTGAGACGGGCCTGGATCCATTTCCTTCCCGGATCTTGAAA
GAAGAGGCCAAAGGAAAGGAGAAAGAGGTGGATGGTCTATTGACTTCAGATCCTATGGGATCCCCAGTCT
CCTCTAAGACAGAATCCATATTGGATAAGGAAGACAAAGTGCCCATGGCAGGAGTAGGAGGGACTGAGGG
GCCAGAGCAGCTCCCAGCACCTTGTCCCAGCCAAACCGGCAGTCCTCCAGTGGGCCTCATCAAGGGGGAT
GAGAAAGAGGAGGGCCCTGTTACTGAACAAGTGAAGAAGTCTACTTTGAACCCCAACGCCAAGGAGTTCA
ATCCAACAAAACCTCTGCTGTCTGTGAACAAATCTACCAGTACTCCAACTTCACCAGGGCCCCGTACTCA
TTCAACACCTTCTATACCGGTGCTGACAGCAGGCCAGAGTGGGCTCTACAGTCCCCAGTACATCTCATAT
ATACCTCAGATCCACATGGGACCAGCTGTACAGGCGCCTCAGATGTATCCATATCCTGTATCCAATTCCG
TGCCTGGGCAGCAGGGCAAGTACCGGGGTGCAAAAGGCTCACTTCCTCCTCAGCGCTCTGACCAACACCA
ACCAGCCTCAGCCCCTCCAATGATGCAGGCTGCTGCTGCTGCTGCTGGCCCACCCCTGGTGGCTGCCACA
CCCTATTCCTCCTACATCCCCTACAACCCACAGCAGTTCCCAGGCCAGCCTGCCATGATGCAGCCCATGG
CACACTACCCTTCACAGCCGGTGTTCGCCCCTATGCTTCAAAGTAATCCACGAATGTTGACATCGGGAAG
CCATCCCCAGGCCATCGTGTCGTCCTCCACTCCTCAGTACCCTGCTGCAGAGCAGCCTACCCCCCAAGCC
CTCTATGCCACTGTTCACCAATCCTATCCACACCATGCCACGCAGCTCCATGGCCACCAGCCGCAGCCGG
CCACCACACCTACTGGGAGCCAGCCACAATCCCAGCATGCGGCCCCCAGTCCCGTTCAGCACCAGGCGGG
GCAGGCCCCTCACCTGGGCAGTGGACAGCCACAGCAGAATCTGTACCATCCAGGGGCCCTAACAGGCACG
CCACCTTCTCTACCACCGGGACCTTCTGCCCAGTCCCCTCAAAGCAGCTTCCCCCAGCCAGCTGCTGTGT
ATGCCATCCATCCCCACCAGCAGCTGCCCCACGGCTTCACCAACATGGCCCATGTTACCCAGGCCCATGT
CCAAACTGGAGTCACAGCAGCCCCGCCCCCACACCCTGGGGCTCCCCACCCGCCCCAGGTGATGCTGCTG
CACCCCCCCCAGGGCCATGGGGGGCCCCCCCAAGGCGCGGTGCCCCCGAGTGGGGTGCCTGCACTCTCAG
CTTCCACACCCTCACCCTACCCCTACATCGGACACCCCCAAGGTGAGCAGCCTGGCCAGGCGCCTGGATT
TCCAGGAGGAGCCGATGACAGGATTCGTGAGTTCTCGTTAGCTGGGGGAATTTGGCATGGAAGAGCTGAG
GGGCTGCAGGTGGGGCAGGATGCACGGGTTCTGGGTGGGGATTGA

Translation (994 aa):
MLSYDSGIGLPRGQTTGKGPPQSPVFEGVYNNSRMLHFLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFEL
AVDAVHRKASEPAGGPRREDIVDTMVFKPSDVLLVHFRNVDFNYATKDKFTDSAIAMNSKVNGEHKEKVL
QRWEGGDSNSDDYDLESDMSNGWDPNEMFKFNEENYGVKTTYDSSLSSYTVPLEKDNSEEFRQRELRAAQ
LAREIESSPQYRLRIAMENDDGRTEEEKHSAVQRQGSGRESPSLVSREGKYIPLPQRVREGPRGGVRCSS
SRGGRPGLSSLPPRGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPLRGAKTLSSPSNRPSGEASVPPT
SAALPFLPVGRMYPPRSPKSAAPAPVSASCPEPPIGSAVASSASIPVTSSVVDPGAGSISPASPKLSLTP
TDVKELPTKEPSRNLEAQELARIAGKVPGLQNEQKRFQLEELRKFGAQFKLQPSSSPETGLDPFPSRILK
EEAKGKEKEVDGLLTSDPMGSPVSSKTESILDKEDKVPMAGVGGTEGPEQLPAPCPSQTGSPPVGLIKGD
EKEEGPVTEQVKKSTLNPNAKEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTAGQSGLYSPQYISY
IPQIHMGPAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAAGPPLVAAT
PYSSYIPYNPQQFPGQPAMMQPMAHYPSQPVFAPMLQSNPRMLTSGSHPQAIVSSSTPQYPAAEQPTPQA
LYATVHQSYPHHATQLHGHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPGALTGT
PPSLPPGPSAQSPQSSFPQPAAVYAIHPHQQLPHGFTNMAHVTQAHVQTGVTAAPPPHPGAPHPPQVMLL
HPPQGHGGPPQGAVPPSGVPALSASTPSPYPYIGHPQGEQPGQAPGFPGGADDRIREFSLAGGIWHGRAE
GLQVGQDARVLGGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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